RNA id: XM_043219885.1


Basic Information

Item Value
RNA id XM_043219885.1
length 1565
RNA type mRNA
GC content 0.56
exon number 8
gene id fdft1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25202241 ~ 25211596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCTCTGTAGAGTTTGAATGGAAATAGCAGCGCGTGGATTTCAGCTCAGCTGTTAAGAAAAGCGTCCTCACGCACGCAGGGGCGAAAATGGACATCCTCAAGTCTCTAGGACACCCGGAAGAAATAATCAACctctttaaatacaaaataggaGGCTGTCGTTCCGTTATGCCTAAACTGGATTATGACTCCATGAGCGAAACCCTGCGGACCTGCTACGCGTATCTGAACCAGACCAGCCGGAGCTTCGCGGCGGTCATCCAGGCCCTGGACGGAGAGCTGCGgcacgCGGTGTGTATCTTCTACTTGGTCCTGCGAGCTCTGGACACGGTGGAGGACGACATGAGCATCCCGCCGGAGAAGAAGGTGCCGCTGCTGCAGGACTTCCACACGTTCCTCTACGAGCCGGAGTGGAGCTTCAGCGAGAGCCGAGAGAAGGACCGGCAGGTTCTGGAGGACTTCCCCACGATTTCAGCGGAGTTCAGGAACCTGGGCCGCGAGTATCGCGAGGTGATCTCGGACATCTGCCGCCGGATGGGTGCGGGAATGGCCGAATTCCTGGAGAAGAAGGTCTCCTCCATGAAGGAGTGGGACAAGTACTGTCACTACGTGGCCGGTCTGGTGGGCGTCGGCCTGTCCCGTCTGTTCTCGGCGTCCCAGCTGGAGGACCCCGAGGTGGGCCGGGACTCGGAGCTGGCCAACTCCATGGGTCTGTTCCTCCAGAAGACCAACATCATCAGGGACTACCTGGAGGACCAGCGGGAGGGAAGGGCCTTCTGGCCCAAAGAGGCTTGGAGTCAGTTTGCGTCTCGTCTGGAGGATCTGGCTCATCCTCAGCACCTGACCTCTGCCCTGTCCTGCCTCAACCTGCTGGTGACCGATGCTCTCCATCACGTCCCGGACGTCATCGCCTACCTGTCCCGACTCCGCAACCAGAGCGTCTTCAACTTCTGTGCCATTCCTCAGGTGATGGCGATAGCGACTCTGTCGGCGTGCTACAACAACCCTCAGGTGTTTCAGGGCGTGGTGAAGATCAGGAAGGGTCAGGCCGTGACGCTCATGATGCAGGCCACCAACATGGCCGCCGTGCAGAGCATCATCGCCCAGTACAGTCAGGAGATCCTGCAGAAAGTGTCCGGCTCGGACCCCTCCCGGGAGAAGACGCTGCACGTCCTGAGCCTGATCCGCGAGAAGAGCCTGTCTCCGGCGGCGCTGTCGTCCCGGGCGCACCACATCTCTCCCGTCTACGTCTCGGCGGCGATGCTGCTAGCGGCACTGAGCTGGCAGTACCTGAACGCCACGGCCGGGCAGCCTCCGGGGGGCGCCGACATGCAGGGACACTGAGAGCaccgcagagagagagagagagctctgtTCCACCGCAGGTTCTTCAGGTcattttcaccccaaaatcaaacgagagaacaataagaaatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatattagtgctgttgAACGATTATTCACGATTAGCcgcatacaaaaataaaagtttgcgtttgtttgca

Function

GO:

id name namespace
GO:0008610 lipid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004310 farnesyl-diphosphate farnesyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209631 lncRNA downstream 33644 25165238 ~ 25168599 (-) True G141951
TU209611 lncRNA downstream 71051 25066735 ~ 25131192 (-) True G141941
TU209616 lncRNA downstream 82480 25068982 ~ 25119763 (-) False G141943
TU209615 lncRNA downstream 131834 25068982 ~ 25070409 (-) True G141943
TU209575 lncRNA downstream 142322 25054807 ~ 25059921 (-) True G141920
TU209657 lncRNA upstream 6933 25218529 ~ 25305703 (-) False G141966
TU209659 lncRNA upstream 6933 25218529 ~ 25305703 (-) True G141966
TU209660 lncRNA upstream 6933 25218529 ~ 25305703 (-) False G141966
TU209658 lncRNA upstream 59946 25271542 ~ 25305703 (-) False G141966
TU209656 lncRNA upstream 60248 25271844 ~ 25305703 (-) False G141966
XM_043218747.1 mRNA downstream 3312 25190559 ~ 25198931 (-) False ctsbb
XM_043218748.1 mRNA downstream 3316 25190559 ~ 25198927 (-) True ctsbb
XM_043219873.1 mRNA downstream 12723 25169118 ~ 25189520 (-) False LOC122325043
XM_043219872.1 mRNA downstream 12724 25169118 ~ 25189519 (-) True LOC122325043
XM_043219874.1 mRNA downstream 12727 25169118 ~ 25189516 (-) False LOC122325043
XM_043219886.1 mRNA upstream 1210 25212806 ~ 25223080 (-) True gata4
XM_043218756.1 mRNA upstream 115015 25326611 ~ 25357995 (-) True wasf1
XM_043220554.1 mRNA upstream 184253 25395849 ~ 25408775 (-) True mettl24
XM_043220321.1 mRNA upstream 259186 25470782 ~ 25561241 (-) False LOC122325309
XM_043220320.1 mRNA upstream 259186 25470782 ~ 25540131 (-) True LOC122325309
TU209178 other downstream 350482 24847665 ~ 24851761 (-) False rhpn1
TU209125 other downstream 554822 24571413 ~ 24647421 (-) True G141651
TU209099 other downstream 671368 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 941207 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 1195578 24004687 ~ 24006665 (-) True G141502
TU209665 other upstream 116984 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 119330 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 181524 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 184612 25396208 ~ 25407942 (-) False mettl24
unassigned_transcript_2514 other upstream 422264 25633860 ~ 25633943 (-) True trnas-gcu_30

Expression Profile