RNA id: XM_043220315.1


Basic Information

Item Value
RNA id XM_043220315.1
length 2071
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC122325306
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25626652 ~ 25630935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTAGGAATCGGTAGCAGCGAGGCTAACGAGTGACAGCGCGTCCCCGCGACGCGCGCGTCGGCTGTCCGTCATGTGAAACGGCTAGGCTcggcgagaaaaaaaaaaaacgccgcTTGCGCGTTGAACGCCTCGACGCGTTTTTTCTGGCGCGCAGCGAAAGCGTCTTTAAACCCGGCTCGGCGTCGCGCTCGGTTCCCGCAGGTTTAATCGTGGCGTTCGCGGACGCGAAACCGAAAGCGCACGCATGCAGAAATTCTCTGCAGAGTGTGGTTCTAAAGAAAAATGCCTCTAAGAAAAATGCCTTATGGGAAACACCGTCGTTCGATTACATTCCAGAACTAGAGGACCAACACGAAGCTGCATTTTCTATGATAACGTTTTGTACCCAACCTGCTGGCGCGGACTTCTTTCGCATCGCAAACCTGCCGTCCTCGTCTCCCGAATCGTTTCTGCGACCGTCCCGCGAGGCGACTGCCTATCATGAGATTCCGAATTTACAAGCGTAAGGTGGTAATACTGACTCTAGTGGTGGTCATCTGCGGGTTCGCCGTCTGGAATAGCGGGAAACCCAAGAAGGCGAGCGCCGCCGCGTTTCCCAAAGAGACGGAAGCAGGCAAACGGAGCAGCGTTGGCGGTCAACTCCAAGTACAGGTCACGATCCCGGTAACCCGTAAGCCCGTCAACGAAACGCTTCCGGAAAAACAGCAATTACAAATCCAGGCAGCTGCCAAATCCGAAGTGGACAACGCAACTCTGGTGTACCGAGGAATCGTCTTTCAGCTCAACTTCGACCAGACCCTAAGAAACGAGGAGAAATTTCGCTCCCTGCGGCTGAAGGACGACTTGGTCGTCGTCGTCCAAGTTCACAACCGCCCCGAATACCTGCGCCTGCTGGTGGACAGCTTGAGGAAATCGAAAGGAATCGAGAACGTCTTGCTGATATTCAGCCACGACTTCTGGTCGCCGGAAATCAACCGGATCGTGGCGTCCGTCGACTTCTGCTTGGTCCTTCAGATATTCTTCCCTTTCAGCATCCAGCTCTACCCTCAAGAGTTCCCCGGGAACGACCCCAGGGACTGCCCTCGAGACATTCCCAAGAAAGATGCCTTAACCCTGGGCTGCTTAAACGCGGAGTACCCGGACTCCTTCGGACACTACCGGGAAGCCAAGTTCTCGCAGACCAAACACCATTGGTGGTGGAAGCTGCACTTCGTTTGGGATCGAGTCCGAGTCTTGAAGGAGCACCGAGGACTCTTATTGCTCATCGAGGAGGACCACTACCTCGCCCCCGATTTCTACCATCTCCTCAAACTCATGGCCTCCCTCAAGAAAGAGCAGTGTCCCGACTGCGACATCTTATCCCTAGGGAGCTACGGACACGTCGGCTACTCCAGCAAAGCCAACAAAGTGGAGGTGAAGGCGTGGAAGTCCACCGAGCATAACATGGGAATGGCGCTGAACCGAGACACCTACCAAAAACTCCTCAGATGCACCGATGCCTTCTGCACCTACGACGACTATAACTGGGACTGGTCGTTGCAGCACCTTACCGTGACCTGTTTGCCCGCGTTCCTGAAGGTCATGGTCAGCGAGGCGCCCCGCGTCTTCCACGCCGGCGACTGTGGCATGCACCACAAGAAGTCGGCTTGCATGCCGTCCAGCCAGAAGACGAAAATTGAGAATGTTCTCCAGAGCAGCGGGAACCAGTTGTTTCCCAAACAGCTGCTCATTACAAAGAGACTCCCAGCTTCCGGAGCCAAGGGAGTGGCTCCTCACGTCAAAAACGGAGGCTGGGGAGACATCAGGGACCATGAACTCTGCAAGAGCTACAGCCGATTGCAGTgactttgtattgtttttgttgtttgtttgtttgttgttgtttttttgcatcctcTAATGAAAGCCTTTAAAAGTTCTTAACGGACTATTTCTTCCTATTGCCTGTTTTATTGAgatattccaaataaaaaaagtatgtgaCGTTTGGATTTGGTGGTTATGAGCATCATTGAAGTATTATCACTGTTGTCATATTATCTattattaaacagcatttttgtgcCA

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209743 lncRNA downstream 29840 25474206 ~ 25596812 (-) True G142015
TU209776 lncRNA downstream 47391 25514247 ~ 25579261 (-) True G142042
TU209744 lncRNA downstream 98691 25523201 ~ 25527961 (-) True G142016
TU209754 lncRNA downstream 167420 25457409 ~ 25459232 (-) True G142026
TU209730 lncRNA downstream 194966 25430799 ~ 25431686 (-) True G142009
TU209814 lncRNA upstream 120699 25750918 ~ 25753680 (-) False LOC122324601
TU210004 lncRNA upstream 208153 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA upstream 233214 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA upstream 233214 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA upstream 233439 25863658 ~ 25865079 (-) False G142201
XM_043220308.1 mRNA downstream 11376 25609316 ~ 25615276 (-) True hsp90aa1.1
XM_043220306.1 mRNA downstream 17507 25597113 ~ 25609145 (-) True hsp90aa1.2
XM_043220307.1 mRNA downstream 18506 25597113 ~ 25608146 (-) False hsp90aa1.2
XM_043220310.1 mRNA downstream 30477 25576029 ~ 25596175 (-) True ppp2r5cb
XM_043219136.1 mRNA upstream 117448 25747667 ~ 25754002 (-) True LOC122324601
XM_043220555.1 mRNA upstream 124281 25754500 ~ 25776163 (-) True LOC122325519
XM_043218660.1 mRNA upstream 257950 25888169 ~ 25926619 (-) False pak5
XM_043218661.1 mRNA upstream 259256 25889475 ~ 25935072 (-) False pak5
XM_043218662.1 mRNA upstream 259256 25889475 ~ 25926950 (-) False pak5
TU209689 other downstream 218710 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 218710 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 249236 25330926 ~ 25377416 (-) False wasf1
TU209665 other downstream 297047 25328580 ~ 25329605 (-) False wasf1
TU209178 other downstream 774891 24847665 ~ 24851761 (-) False rhpn1
unassigned_transcript_2514 other upstream 3641 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209806 other upstream 18273 25648492 ~ 25650093 (-) True G142058
XR_006247208.1 other upstream 120698 25750917 ~ 25754008 (-) False LOC122324601
XR_006247205.1 other upstream 120704 25750923 ~ 25753677 (-) False LOC122324601
XR_006247207.1 other upstream 122322 25752541 ~ 25754004 (-) False LOC122324601

Expression Profile