RNA id: TU209754


Basic Information

Item Value
RNA id TU209754
length 1800
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G142026
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25457409 ~ 25459232 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacacacacacagacacacacacacaaacagagacacacagacacacacagacacacacacacacacacacacataacagacagacagagacacacataaAGAAGTGTAATCTGtccactgtaaaaaataaaaaagaattaccgtaaaataacagtaaaattacaGCTCTTCATTTTTACAGCATGCTACTGTTATACTACCTTGGATTAACTCTAGCTCTACGTGCGTCAAACAGTTCGAGTTGAAAACACTATCATTCACACAGTGATGGTCATGTGAACCTGTTTCTGAGTCCACTAAGAAAATAAATTCGTAGTATAAATCAGAAAACATAAGTAACAAAAAACGTCTTTAACTCAAGTAGTTGCAGTTCATCATAACTACAGTAAACTAACAGATCTCTCGAGGAAAAGCACGTCCATACctttcagttacatttttactCTTATCATTAGTTCAAGTGCTGTTTCctgtaaaaattactttttgttctGTTTGGTCAATTTGACTCTTTTACGGTAAAATGCTGTTTTCGGGTTGCCAGTAATGCACTGTTTTCTGCCGTAATCCAATTACGGTTCGCTgctgttaaattacatttaacgcTCGCATATTTAACCCTTTAAACCCCACAGCACCTTATAATGTGCGCTAAAGCAACACAGAATCGACGTTGAAGTTAGCGAAGGAATTCTGagagaaataattataattgtgcATTTATGCGACGCAATTCTGAGACATAATAAAGTCACAACTAGCTTTTTTATTCAGCGGCAGAAACACACTTCTACACACTTTCCCGTTCTGTAGTCGCCATCTTTAATTCTGTATAGTTCTAATCCTTAATGTAGTTCTTACTCTGCTGCTGTTCCTGGCGCTCGGCGCCGGCTCGTCTCTCAGCCTCTTCATCGCTGCTATCGGCGTCTCGCTGAAGTACGGAGGTTCTCCGTCGATCATCTCCACCACCATGATGCCCAGAGACCACACGTCCACCTACAGACACACGAAACACCGCTTCAGCTCATTCTGGAGCATTACTGTTTTAGCACGGTAATTGATCGAGGTTTCGTATATTATTTGGACATGTTTTATTATAGCTGTCGCATGTAAACGTGTTTAAAAACCACTATGGCGTTAAATAACAGTAACGTAGAGCGGATTCGCTGCCGATCGTTTACAGCTCTTCTTTTTTACAGCATGTTACTGTAATAGTGTCTATCTCCGGCTGAGAGGTGACCCTCAAAACAGAGCTCCCTTTTTATGTtcagttacataaaaaaaaaaactttaagatGTCCAAATGAAGGTCTCaagaatgcatattactaaataaaaaaagaaagactttttttttttttacaaaatacctTCATGGTACATGATTTggcaaaaaatgtataattttgagccatacagtgtattgttttCTATTGATACAGACGCCCCTGATTCTGTGCTCCGGGGTCATATATAACTCCATACAGGTTCCCCAAAGAAACTATCACTGCTTTATTCTCTGAAACATTCATGTGGCATTTAGGTCCTTTCAGAGGACAAGTTgcaaaagtaactttttttttttttttttttgcacaaccaaaaaaaaattataataaaaattgaaaactttttgaaaatattttgccCATTTCAGAAATTCATAACTGACCGGGAACAACAAAAACCTTCTAAGaacatgcaatatttattagGGATGTAAAACTCGTTAAAGGACATAAAAGAtcattccacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209730 lncRNA downstream 25723 25430799 ~ 25431686 (-) True G142009
TU209725 lncRNA downstream 31086 25425618 ~ 25426323 (-) True G142006
TU209714 lncRNA downstream 57168 25399551 ~ 25400241 (-) True G141998
TU209690 lncRNA downstream 63726 25338356 ~ 25393683 (-) False mettl24
TU209686 lncRNA downstream 63779 25388729 ~ 25393630 (-) False mettl24
TU209743 lncRNA upstream 14974 25474206 ~ 25596812 (-) True G142015
TU209776 lncRNA upstream 55015 25514247 ~ 25579261 (-) True G142042
TU209744 lncRNA upstream 63969 25523201 ~ 25527961 (-) True G142016
TU209814 lncRNA upstream 291686 25750918 ~ 25753680 (-) False LOC122324601
TU210004 lncRNA upstream 379140 25838372 ~ 25865079 (-) False G142201
XM_043220554.1 mRNA downstream 48634 25395849 ~ 25408775 (-) True mettl24
XM_043218756.1 mRNA downstream 99414 25326611 ~ 25357995 (-) True wasf1
XM_043219886.1 mRNA downstream 234329 25212806 ~ 25223080 (-) True gata4
XM_043219885.1 mRNA downstream 245813 25202243 ~ 25211596 (-) False fdft1
XM_043219884.1 mRNA downstream 248176 25202241 ~ 25209233 (-) True fdft1
XM_043220321.1 mRNA upstream 11550 25470782 ~ 25561241 (-) False LOC122325309
XM_043220320.1 mRNA upstream 11550 25470782 ~ 25540131 (-) True LOC122325309
XM_043220319.1 mRNA upstream 11550 25470782 ~ 25480800 (-) False LOC122325309
XM_043220311.1 mRNA upstream 116797 25576029 ~ 25596184 (-) False ppp2r5cb
XM_043220310.1 mRNA upstream 116797 25576029 ~ 25596175 (-) True ppp2r5cb
TU209689 other downstream 49467 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 49467 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 79993 25330926 ~ 25377416 (-) False wasf1
TU209665 other downstream 127804 25328580 ~ 25329605 (-) False wasf1
TU209178 other downstream 605648 24847665 ~ 24851761 (-) False rhpn1
unassigned_transcript_2514 other upstream 174628 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209806 other upstream 189260 25648492 ~ 25650093 (-) True G142058
XR_006247208.1 other upstream 291685 25750917 ~ 25754008 (-) False LOC122324601
XR_006247205.1 other upstream 291691 25750923 ~ 25753677 (-) False LOC122324601
XR_006247207.1 other upstream 293309 25752541 ~ 25754004 (-) False LOC122324601

Expression Profile