RNA id: XM_043220308.1


Basic Information

Item Value
RNA id XM_043220308.1
length 2503
RNA type mRNA
GC content 0.50
exon number 11
gene id hsp90aa1.1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25609316 ~ 25615276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTCTGCTCGCGAGCATATAAAGGCCGAAGAAGGCCCGACGCTCGGCAGATAAAGCCAGAGCAGCGACGAGAAGCAGACAACCTCGTGATCCAGTGGAGTAGACCTCCATACGACTTTCTGCACAGACGTTTCCTACAGAAGACCATCCTCAAGATGCCTGAGAACGCCGCACAGCCCGTGATGGAGGAAGACGTCGAGACCTTCGCCTTCCAGGCTGAGATCGCTCAGCTGATGTCTCTGATCATCAACACTTTCTATTCCAACAAAGAGATCTTCCTCAGGGAGCTCATCTCCAACTCTTCAGATGCACTGGACAAGATCAGATACGAGAGCTTGACAGACCCCGGCAAACTCGACTCATGCAAGGACCTTAAGATCGAACTCACCCCTGATCAGAAACTGCGCACGCTGACCATCGTGGACACCGGCATCGGCATGACCAAAGCGGACCTCATCAACAACCTGGGCACCATCGCCAAGTCCGGCACCAAGGCCTTCATGGAGGCTCTGCAGGCCGGAGCGGACATTTCCATGATCGGTCAGTTCGGAGTGGGCTTCTATTCGGCCTACCTGGTGGCCGAGAAAGTGACGGTCATCACCAAACACAACGATGACGAGCAGTACATCTGGGAGTCTGCCGCTGGTGGTTCCTTCACAGTGAAGCCAGACTACGGCCCATCCCTTGGACGTGGCACCAAGGTCATTCTCCACCTCAAAGAGGATCAATCTGAATATGTTGAGGAGAAGCGCGTCAAGGAAGTCGTGAAGAAGCACTCTCAGTTCATCGGTTACCCCATTACGCTCTTCattgagaaacagagagagaaagaggttgACCTGGAAGAAGgagaaaaggaggaggaggtggcggCCGGCGAAGAGAAAGACAAACCTAAGATTGAGGACTTGGGCGCCGATGAAGATGAAGACACCAAAGACGGTCAgaacaagaggaagaagaaggtGAAGGAAAAGTACATCGATGCTCAGGAGCTCAACAAGACCAAGCCCATCTGGACCCGTAACCCTGATGACATCACTAACGAGGAGTACGGAGAGTTCTACAAGAGTCTGAGCAACGACTGGGAGGACCACCTGGCTGTTAAGCACTTCTCAGTTGAGGGCCAACTGGAGTTCCGCGCTTTATTGTTTGTACCCAGAAGAGCCTCTTTTGACCTTTTCGAGAACAAGAAGAAGAGAAACAACATTAAGTTGTACGTGCGCAGGGTCTTTATCATGGACAACTGTGAGGAGCTCATTCCAGAATACCTCAACTTCATCAAGGGCGTGGTGGACTCTGAGGATCTGCCGCTCAACATCTCCAGAGAGATGCTTCAGCAGAGCAAGATCCTGAAGGTCATCCGCAAGAACCTGGTCAAGAAGTGCCTGGAGCTCTTCACCGAACTCTCCGAGGACAAAGAGAACTACAAGAAGTTGTACGAGCAGTTCTCCAAGAACATCAAGCTGGGCATCCACGAAGACTCTCAGAACCGCAAAAAACTCTCAGAGCTGCTTCGCTATTACACATCGGCTTCTGGAGACGAGATGGTGTCCCTCAAAGACTATGTCTCTCGCATGAAGGACAGTCAGAAGCACATCTACTACATCACTGGCGAGACCAAAGATCAGGTGGCCAACTCTGCTTTCGTGGAGCGTCTGCGCAaagctggtctggaggtgatctaCATGATCGAGCCCATCGACGAATACTGCGTCCAGCAGCTGAAGGAATACGATGGCAAAAACCTGATTTCGGTGACCAAGGAGGGTCTGGAGCTGCccgaggatgaggaggagaagaagaagcagGAAGAGCTGAAGACCAAATATGAGAACCTGTGCAAGATCATGAAAGACATCCTGGACAAAAAGATTGAGAAGGTCACCGTCTCAAACCGCCTGGTTTCTTCGCCCTGCTGCATCGTCACGAGCACATACGGCTGGACGGCCAACATGGAGAGGATCATGAAGTCTCAGGCCTTGAGGGACAACTCCACCATGGGCTACATGACCGCCAAGAAGCACCTGGAAATCAACCCCGCCCATCCCATCGTCGAGACCCTCAGAGAGAAAGCGGAAGCTGACAAGAACGACAAGGCAGTGAAGGACTTGGTGATCTTGCTGTTCGAAACCGCCCTGCTCTCCTCTGGATTCACCCTGGAAGACCCACAAACACACGCTAACCGCATCTACAGGATGATCAAACTCGGGCTCGGCATAGATGACGACGACTCCGCTGTAGAAGACATTTCTCAACCCGCCGAAGAAGACATGCCAGTTCTGGAGGGCGACGACGACAGCTCTAGAATGGAGGAAGTCGACTAAAGAGTTTTAGTGTAAATAACTCTACactgttaatttattgtttttgtaaaaaacaatCTGAAAGTGATCATTAACGAGtacatgttttttctttgtagtACTGtaccagaattttttttatgagtttttttgtttgtttttgtaatcccgattttgaacgtttttaataaatgac

Function

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042470 melanosome cellular_component
GO:0030018 Z disc cellular_component
GO:0005524 ATP binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209743 lncRNA downstream 12504 25474206 ~ 25596812 (-) True G142015
TU209776 lncRNA downstream 30055 25514247 ~ 25579261 (-) True G142042
TU209744 lncRNA downstream 81355 25523201 ~ 25527961 (-) True G142016
TU209754 lncRNA downstream 150084 25457409 ~ 25459232 (-) True G142026
TU209730 lncRNA downstream 177630 25430799 ~ 25431686 (-) True G142009
TU209814 lncRNA upstream 135642 25750918 ~ 25753680 (-) False LOC122324601
TU210004 lncRNA upstream 223096 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA upstream 248157 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA upstream 248157 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA upstream 248382 25863658 ~ 25865079 (-) False G142201
XM_043220306.1 mRNA downstream 171 25597113 ~ 25609145 (-) True hsp90aa1.2
XM_043220307.1 mRNA downstream 1170 25597113 ~ 25608146 (-) False hsp90aa1.2
XM_043220311.1 mRNA downstream 13132 25576029 ~ 25596184 (-) False ppp2r5cb
XM_043220310.1 mRNA downstream 13141 25576029 ~ 25596175 (-) True ppp2r5cb
XM_043220312.1 mRNA downstream 18588 25576029 ~ 25590728 (-) False ppp2r5cb
XM_043220313.1 mRNA upstream 11376 25626652 ~ 25630935 (-) True LOC122325306
XM_043220315.1 mRNA upstream 11376 25626652 ~ 25630219 (-) False LOC122325306
XM_043219136.1 mRNA upstream 132391 25747667 ~ 25754002 (-) True LOC122324601
XM_043220555.1 mRNA upstream 139224 25754500 ~ 25776163 (-) True LOC122325519
XM_043218660.1 mRNA upstream 272893 25888169 ~ 25926619 (-) False pak5
TU209689 other downstream 201374 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 201374 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 231900 25330926 ~ 25377416 (-) False wasf1
TU209665 other downstream 279711 25328580 ~ 25329605 (-) False wasf1
TU209178 other downstream 757555 24847665 ~ 24851761 (-) False rhpn1
unassigned_transcript_2514 other upstream 18584 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209806 other upstream 33216 25648492 ~ 25650093 (-) True G142058
XR_006247208.1 other upstream 135641 25750917 ~ 25754008 (-) False LOC122324601
XR_006247205.1 other upstream 135647 25750923 ~ 25753677 (-) False LOC122324601
XR_006247207.1 other upstream 137265 25752541 ~ 25754004 (-) False LOC122324601

Expression Profile