RNA id: XM_043220306.1


Basic Information

Item Value
RNA id XM_043220306.1
length 2625
RNA type mRNA
GC content 0.55
exon number 11
gene id hsp90aa1.2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25597113 ~ 25609145 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTCTGGAGCGTCCGCGTTCTCGAACTCTCCCGTCAGGACGTATAAAAGCGCGCCGCCGGCGTGACGCACGCGACAGGCTCTCCCGAAGCTCAGTGACAGCTGAGGAGGAGAAACCTCACGGGCTTAAATCAAATTCGCTTTAATAAACCCGTCAAGATGCCGGAGGCAAATGACCAGCCGATGGAGGAGGAAGCGGAGACCTTCGCCTTCCAGGCTGAGATCGCTCAGCTGATGTCTCTGATCATCAACACTTTCTATTCCAACAAAGAGATCTTCCTCAGGGAGCTCATCTCCAACTCTTCAGACGCTTTGGACAAAATCCGCTACGAGAGCCTCACAGACCCGAGCAAGCTGGACTCGGGGAAAGACCTCAAAATCGAAATCATCCCCGACAAGCAGGAGCGCACGCTGACCATCGTGGACACCGGCATTGGCATGACCAAAGCGGACCTCATCAACAACCTGGGCACCATCGCCAAGTCCGGCACCAAGGCCTTCATGGAGGCTCTGCAGGCCGGAGCGGACATTTCCATGATCGGTCAGTTCGGAGTGGGCTTCTATTCGGCCTACCTGGTGGCCGAGAAAGTGACGGTCATCACCAAACACAACGACGACGAGCAGTACGCCTGGGAGTCTTCGGCTGGGGGATCGTTCACCGTTAAAGTGGACAGCTCCGAGCCGATCGGTCGTGGCACAAAAGTGATTCTGCATCTGAAGGAGGATCAGACGGAGTACATCGAAGAGCGGCGGATCAAAGAGATCGTCAAGAAGCACTCGCAGTTCATCGGCTACCCCATCACGCTCTTCGTGGAGAAGGAGCGCGACAAGGAGGTGAGCGACGACGAGgcggaggaggagaaggagaaagagaaggaggaggaggagggagagaagGACGAAGACAAGCCCGAGATCGAAGACGTGGGCTCAGACGACGAGGACCACGACGACAAGTGCTCcgacaagaagaagaagaagaagatcaaGGAGAAGTACATCGACCAGGAGGAGCTCAACAAGACCAAGCCCCTGTGGACCCGAAACCCCGATGACATCACCAACGAGGAGTACGGCGAGTTCTACAAGAGTCTGACCAACGACTGGGAGGACCACCTGGCGGTCAAGCACTTCTCAGTGGAGGGCCAGCTGGAGTTCCGCGCGCTGCTCTTCGTGCCTCGCCGAGCTCCCTTCGATCTCTTCgagaacaagaagaagaagaacaacatCAAGCTGTACGTGCGCAGGGTCTTCATCATGGACAACTGCGACGAGCTCATCCCAGAATACCTCAACTTCATCAAGGGCGTGGTGGACTCCGAGGATCTGCCGCTCAACATCTCCAGAGAGATGCTTCAGCAGAGCAAGATCCTGAAGGTCATCCGCAAGAACCTGGTCAAGAAGTGCCTGGAGCTCTTCACCGAACTCTCCGAGGACAAAGAGAACTACAAGAAGTTCTACGAGCAGTTCTCCAAGAACATCAAGCTGGGCATCCACGAAGACTCTCAGAACAGGAAGAAGCTCTCCGAGCTGCTCCGCTATTACACATCGGCTTCTGGAGACGAGATGGTGTCCCTCAAAGACTACGTGACTCGAATGAAGGACACGCAGAAGCACATCTACTACATCACCGGTGAGACCAAAGATCAGGTGGCCAACTCTGCTTTCGTGGAGCGTCTGCGCAaagctggtctggaggtgatctaCATGATCGAGCCCATCGACGAATACTGCGTCCAGCAGCTGAAGGAGTTCGAGGGCAAGAACCTGGTCTCGGTGACCAAGGAGGGTCTGGAGCTGCccgaggatgaggaggagaagaagaagcagGAAGAGAAGAAGGCCAGGTTTGAGAACCTGTGCAAGATCATGAAAGACATCCTGGAGAAGAAAGTCGAGAAGGTCACCGTCTCAAACCGCCTGGTTTCGTCGCCCTGCTGCATCGTCACGAGCACATACGGCTGGACGGCCAACATGGAGAGGATCATGAAGGCCCAGGCCCTGAGGGACAACTCCACCATGGGCTACATGGCGGCCAAGAAGCACCTGGAGGTCAACCCCGATCACCCCATCGTCGAGACGCTCCGCCAGAAAGCGGAGGCCGACAAGAACGACAAGTCAGTGAAGGACCTGGTGATCCTGCTGTTCGAGACGGCGCTGCTCTCCTCGGGCTTCACGCTGGACGACCCACAGACGCACTCCAACCGCATCTACAGGATGATCAAACTCGGGCTCGGCATCGACGAGGACGATCTGTCCCCAGAGGAGCCCAGCGCGGCTCCGGTCGAGGACATGCCTCCGCTGGAGGGAGACGACGACGCGTCCCGCATGGAGGAGGTCGACTGAGACGCCGCGCCGCTGTCTGTAGCTCTGTAAAAACATCCCGTTGTTCATAGCTCTCGTCGTTCCTCGCAGTTCCCGTTCATTCCCGTTCGGTCGGCAAAGCTTTCGGGAAACGTCTCGTCGTCCCACATTCcctatttttttgtactttttatttttttgagttgTGCTtcgttttgtatttattgattaacGTTATGATGTTGATTTTGAGTTCATTAAGGGACACAGGTACTGTATTATTAACGTGACGGGATCCTGAAATAAAGCTTGCCATATCAGA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209743 lncRNA downstream 301 25474206 ~ 25596812 (-) True G142015
TU209776 lncRNA downstream 17852 25514247 ~ 25579261 (-) True G142042
TU209744 lncRNA downstream 69152 25523201 ~ 25527961 (-) True G142016
TU209754 lncRNA downstream 137881 25457409 ~ 25459232 (-) True G142026
TU209730 lncRNA downstream 165427 25430799 ~ 25431686 (-) True G142009
TU209814 lncRNA upstream 141773 25750918 ~ 25753680 (-) False LOC122324601
TU210004 lncRNA upstream 229227 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA upstream 254288 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA upstream 254288 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA upstream 254513 25863658 ~ 25865079 (-) False G142201
XM_043220311.1 mRNA downstream 929 25576029 ~ 25596184 (-) False ppp2r5cb
XM_043220310.1 mRNA downstream 938 25576029 ~ 25596175 (-) True ppp2r5cb
XM_043220312.1 mRNA downstream 6385 25576029 ~ 25590728 (-) False ppp2r5cb
XM_043220321.1 mRNA downstream 35872 25470782 ~ 25561241 (-) False LOC122325309
XM_043220320.1 mRNA downstream 56982 25470782 ~ 25540131 (-) True LOC122325309
XM_043220308.1 mRNA upstream 171 25609316 ~ 25615276 (-) True hsp90aa1.1
XM_043220313.1 mRNA upstream 17507 25626652 ~ 25630935 (-) True LOC122325306
XM_043220315.1 mRNA upstream 17507 25626652 ~ 25630219 (-) False LOC122325306
XM_043219136.1 mRNA upstream 138522 25747667 ~ 25754002 (-) True LOC122324601
XM_043220555.1 mRNA upstream 145355 25754500 ~ 25776163 (-) True LOC122325519
TU209689 other downstream 189171 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 189171 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 219697 25330926 ~ 25377416 (-) False wasf1
TU209665 other downstream 267508 25328580 ~ 25329605 (-) False wasf1
TU209178 other downstream 745352 24847665 ~ 24851761 (-) False rhpn1
unassigned_transcript_2514 other upstream 24715 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209806 other upstream 39347 25648492 ~ 25650093 (-) True G142058
XR_006247208.1 other upstream 141772 25750917 ~ 25754008 (-) False LOC122324601
XR_006247205.1 other upstream 141778 25750923 ~ 25753677 (-) False LOC122324601
XR_006247207.1 other upstream 143396 25752541 ~ 25754004 (-) False LOC122324601

Expression Profile