RNA id: XM_043220312.1


Basic Information

Item Value
RNA id XM_043220312.1
length 4231
RNA type mRNA
GC content 0.50
exon number 14
gene id ppp2r5cb
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25576029 ~ 25596184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGCTCTCGAAACGGAAATTTATAAACAGATTTCACAAACGCGTCTTAAATCTGCTCACATTATTAGTCGAGAGAGAGCGGCATGTATAAGTTATTTAGGCTCTGCAGCAGGACTCGCTGACCAATCACACGCGCAGACCCGCAGCTCGCGCCGGCCAATCAGCAGCCTCCCTTCTGCTGGCGATCACGTGGTCTGCCTCGGCCAATCGGCGGCCTCCGCTCGGCGGGCGACGTCACTCGCCAGCCGCTTCCCTCCAGCGGCGGAGCTTCATTTTCTGCTGAGAGCGTTCGTGCTAAAATGGAGGCTAGCCGCTCGACCTAGCCGCGTCGCGCCCGATCCGTAGATGTTGACATGCTCTAAAGAGGAGGCCGGGATGGTTCTGGATGCCCCGAGCGCCAACGGGCCCTTTCAGCCGGTGGCCCTGATGCACTTTAGAGATGTTCCTCCCGCCGAGCAGGAGAAGCTGTTCGTGCAGAAGCTGCGTCAGTGCTGCGTTCTCTTCGACTTCGTCTCGGACCCGCTGAGCGACCTGAAATGGAAGGAGGTGAAGCGGGCGGCGCTCAGCGAGATGGTGGAGTACATCACCCACAACAGGAACGTCATCACCGAGCCCATCTATCCTGAGGTGGTGCACATGTTCGCGGTCAACATGTTCAGGACGTTGCCGCCGTCGTCCAACCCGACCGGAGCGGAGTTCGACCCCGAGGAGGACGAGCCCACGCTAGAAGCGGCCTGGCCTCACCTGCAGCTCGTCTACGAATTTTTCCTGCGTTTTTTAGAGTCACCGGACTTTCAGCCAAACATAGCCAAGAAGTACATCGACCAAAAGTTTGTGTTGCAGCTGCTGGAGCTGTTCGACAGCGAAGACCCTCGAGAGCGGGACTTTCTGAAGACCACTCTCCATCGCATCTACGGGAAGTTCCTGGGTCTCCGAGCGTACATCAGGAAACAGATCAATAACATCTTCTATAGGTTCATCTATGAAACAGAACATCATAATGGAATAGCAGAACTACTGGAAATATTAGGAAGCATCATTAACGGCTTCGCCTTACCGCTGAAAGAAGAGCACAAAATCttccttttaaaagttttgttaCCTTTGCATAAAGTCAAGTCCCTCAGTGTTTATCACCCACAGCTGGCGTACTGTGTGGTTCAGTTTCTAGAGAAGGACAGCACTCTCACTGAGCCGGTGGTGATGGCTCTCCTCAAATACTGGCCAAAGACTCACAGTCCAAAGGAGGTGATGTTTCTGAACGAGCTGGAAGAGATTCTGGACGTCATCGAGCCGTCGGAGTTTGTGAAAGTGATGGAGCCTCTGTTCAGGCAGCTGGCCAAATGCGTGTCCAGTCCTCACTTCCAGGTAGCGGAGCGAGCGCTGTACTACTGGAACAACGAGTACATCATGAGTCTGATCAGCGACAACGCGGCGAGGATCCTGCCCATCATGTTCCCCTCGCTGTACCGGAACTCCAAGACCCACTGGAATAAGACGATCCACGGGCTGATCTACAACGCTCTCAAGCTCTTCATGGAGATGAATCAGAAGCTCTTCGACGACTGCACGCAGCAGTTCAGGGCCGAGAAAAACAAAGAAAAGGCCAAGTGGAAAGAGCGCGAGGAGGCGTGGATAAAGATCGAGAATCTCGCCAAATCAAACCCACAGTTTCTCATGTACATCGACTCCACCAGCCTCAGCAGTCCGATGGACATGGAGACAGACGGGCCAATCATCGAGGATGTCATGATGCTAAAAAAGACTGTAGAAGAAGAAGCCACTCAGCTCCACAGAGACCAGCGTAAAGAACGTCCCCTGATGCGACGCAAGTCCGAGCTGCCTCAGGATACCTCCACCGTGAAGGCCCTGGAGACGCACCGGCGCGCCGAGGACATGATCGGTGCCCAGGACGGCCACTAGAGGACCACAGACTCCCCGAACCCAgtccagaccagaccagaccagtcTCAGCCGGCGCCTTCAGCACAGACGACCAGCGGCGGAGGACGGCTCCGGTGCGACCCGCGTCCTGTCCAGAGCCGACCGCGTCCAGACCCCCTCGATCCGCGCTAGTccagactcctcctcctcctctccgcTTTCGTTTGTCCGTTTCTCTCCGTTAAAGGGATGGCTCACTCCAAAGTCACGTGTAATCGCTCGCCGTCGCGTCAATCCGAACCGAATTTCTAGTAAGTTTCAGTAAACGTCCCAAAAATCGTTCCAGTACTCTATTTCAGATCTTCGCTCACCTTCAGGAAGATTGCGATATTTCCGATGACGTCCGAGAGTACGACGCTGCGTAGACGGCAAAGCAACTCGAACGTTCCCAGGCACGAAAGCGTAGAACGCTAAAACATTAGTAGTTCGACCGCAAAGCTACGGATACTTTTTGTGCgcaaaaacccccaaaacaatgactttattcagcaattcGTCTCTGAATCCCGAGGCGCGCTCCGCTTGTTTACCCAGAATGCAATCAACGCAATCGGCGAAAAACGTAGCGAGGAGAACGCTAAAACATTAGTAGTTCGACCGCAAAGCTACGGATACTTTTTATGCgcaaaaacccccaaaacaatgactttattcaacaattcgtcTCCGAATCCCGAGGCGCGCTCCGCTCGTTTACCCAGAATGCAATCGGCACCGTTTACGTTTGTAACGCGTTGCATGCTAAACGTAACCAACTCCGATCACGGTGATGTTGTGGGAAAAGCGCGCGCGTGTTGCAAAACTCCAAAACAACGGTAACTCGTGGAGGAGAATCGGTGCAAGAAAGTGTTCGCGAAACGAAAGTTTAGCCTCCGATGTCACTTGTGCCGTTTTAACGATGTTCTTGCGACGTTTCTTTAGTGTTCAGAGAGCTTTCGGATTTGTCAAAAAATATCTTGGTTCACGTTTCGAAGGCGAACAAAGGCCGTCTCGGGAACGACGCGAGGGCGAGTATTTAtccgaattttttttttggtttgcgctatccctttaagctgaACCGCACTTGTATTCGGGCGAGCGAACGCTTCTCAGGTTGTTCGGAGGCCGAGAGGGATTTCGCTCTCTCCCGTGGTCTCGTCTGAAAAAAACGAAACGGCGCTCGGGGCGCGTGTTTCACGTCACGCTTGCGAAGCGCCCTTCCGCGCTTGTCCAGATACTCTGCAATAAGTTCGTCCAGGAAGATTTTGGTTGTTCAAACAATGGTGAGCGGCCTTACGAGGGTTACTTAGCTGTCAGACGAGCGTTGGAGCTTTTTAACAGGCAATACCGAACGGGTCGTTTACCCGGGTTTATCGACCAAGCCTTTATTTGCATAGAGTGCCTTTTTAGATCGAGGGGAAAAAcggaaaaaggttttttttttccgccgGAGCGGGGCCGGAGGAGCCCGAGGAAAGAGACGTTCTCCCGATGAACTTGAGCGACTTTCTCTGTGTGTTCGGTTTAGGACGAATCGCTCTGAACCATTGTTTGAACTCCCATTGGGTGAGGCCCGCTCGGAGCTACGGTGCAGTTCTCTCTCTGCGTTCGTCCGTGCCGTGATTTCACGCGATGCAGGTTTTTCTTCTCGGCCCGTATAAGCTCGTCTGTCCGATTTGAATGTGCGAATTTCGATAGATATATGcgttgtttttctctctctctctctctcccgacCTTCTCTtgggtttttaatttaaactccTTGCTCTTTCGGCTGTAGTGCGAAAAtcgaaaaacgttttttttttttatcgccgGTGTCAATAGCAGAagttgcgttttttttttttttccttttttttttttcattgtggtGAATTTCACTTTCCGTTTCGTTTCATGAAAGAAAATACACCTGCAAAGTGTCCTTTAGTACGCGTCCCCCTACTAAACGGCTCCATCTGATATTGTACATATTATGTACTGTTATGATCCATCTATTATTGAATGGTAGATCTCttattttgtacaaattttCTCGTGTACAGATGAAAACCGCTATTAGCCACTTGAAGTTGGTATTCGACAGACTTCTGTAACTGCGTTAGAAACGTTTAGGATCttaatttctaatgtttttgtttttttactatttgtAATTGAGAACTTTTCTGTCTCTGCATTCAGCTGTCTGATGAGATCCATCATAAAATAGCCTTCATATGTGCTTTTCTCCAAATCTCAAGTGGTATATGTCTATAtacaggaaataaagaaaacgtgttttatattttcatcttAA

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209744 lncRNA downstream 48068 25523201 ~ 25527961 (-) True G142016
TU209754 lncRNA downstream 116797 25457409 ~ 25459232 (-) True G142026
TU209730 lncRNA downstream 144343 25430799 ~ 25431686 (-) True G142009
TU209725 lncRNA downstream 149706 25425618 ~ 25426323 (-) True G142006
TU209714 lncRNA downstream 175788 25399551 ~ 25400241 (-) True G141998
TU209814 lncRNA upstream 160190 25750918 ~ 25753680 (-) False LOC122324601
TU210004 lncRNA upstream 247644 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA upstream 272705 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA upstream 272705 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA upstream 272930 25863658 ~ 25865079 (-) False G142201
XM_043220321.1 mRNA downstream 14788 25470782 ~ 25561241 (-) False LOC122325309
XM_043220320.1 mRNA downstream 35898 25470782 ~ 25540131 (-) True LOC122325309
XM_043220319.1 mRNA downstream 95229 25470782 ~ 25480800 (-) False LOC122325309
XM_043220554.1 mRNA downstream 167254 25395849 ~ 25408775 (-) True mettl24
XM_043218756.1 mRNA downstream 218034 25326611 ~ 25357995 (-) True wasf1
XM_043220306.1 mRNA upstream 6385 25597113 ~ 25609145 (-) True hsp90aa1.2
XM_043220307.1 mRNA upstream 6385 25597113 ~ 25608146 (-) False hsp90aa1.2
XM_043220308.1 mRNA upstream 18588 25609316 ~ 25615276 (-) True hsp90aa1.1
XM_043220313.1 mRNA upstream 35924 25626652 ~ 25630935 (-) True LOC122325306
XM_043220315.1 mRNA upstream 35924 25626652 ~ 25630219 (-) False LOC122325306
TU209689 other downstream 168087 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 168087 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 198613 25330926 ~ 25377416 (-) False wasf1
TU209665 other downstream 246424 25328580 ~ 25329605 (-) False wasf1
TU209178 other downstream 724268 24847665 ~ 24851761 (-) False rhpn1
unassigned_transcript_2514 other upstream 43132 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209806 other upstream 57764 25648492 ~ 25650093 (-) True G142058
XR_006247208.1 other upstream 160189 25750917 ~ 25754008 (-) False LOC122324601
XR_006247205.1 other upstream 160195 25750923 ~ 25753677 (-) False LOC122324601
XR_006247207.1 other upstream 161813 25752541 ~ 25754004 (-) False LOC122324601

Expression Profile