RNA id: XM_043224911.1


Basic Information

Item Value
RNA id XM_043224911.1
length 5759
RNA type mRNA
GC content 0.41
exon number 10
gene id mitfb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3060509 ~ 3097035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGGTAATAAGctactagttaagagaccctaatagaaagtgttaccaaaaaagcatttccagaagtaaataaaacaaacactaccgtcacacacacaacatgtaGATTTAGAATTACATTCAGTTAGCCGAATATGATCAATCCGAAGTAATGATACAGCTGCATTTTCAGTAATGCTCTGTCAGCGCGAGAGAGAGTTTGGTGTGGAGTTGTTCCTCACGTGTGCAGCGGTGTTGGATTGGCTGCCGGTGCCTCCCCTTCTGACACGCTTCCATGCAGCGCAGCCGGAGCAGCGTGACTCTCAGAGCTGTCCAAGGGCACGCAGTGCACCTTCAGCGCGCCACATAAAGATGGAGGCTCTGGGCGTCCAAGTGCAGAGACCCTGCTCCTTTCCCTACAGCCGCTTTAATCCATCTGAGCAGCAGCATGGCTCCTCTAAGCCCCCGCTGGGCTCGTCGGCCGTGACCTCTCGTATCCTGCTCCGCCAGCAGCTGATGCGCGAGCAGCTCCAAGAGCAGGAGCGGCGAGAGCAGCAGAGACGGCAGAGCTCAGCGTACGCACAGCCCTTGGTCACCCAGAGCCCCGCCATCAACGTCAGCGTCCCCGCCGGCCTGCCCAGCGCCACCCAGGTGCCCGTGGAAGTGCTGAAGGTTCAAACGCATCTTGAAAACCCCACGAAGTATCACATCCAGCAGGCTCAGAGGCAGCAGGTGAAGGCGTATCTGTCCACCACACTGGGAGGAAAGCTCGGCTCGCAGGCCGTGAGCTTGCCGTGCCCCAGCCAGGCCCCTGACCACGGGGGAATGCCTCCGGGGCCGGGCAACAGCGCCCCCAACAGTCCCATGGCCTTACTGACCCTCAACTCCAACTGCGAGAAAGAGatGGACGATGTCATTGATGACATCATTAGTTTGGAATCCAGTTACAATGATGATATCATGGGACTGTCGTTGGACCCTGGACTTCAGATGGCCAACACGATCCCTGTGTCAGCGAACCTCTTGGACATGTATGGTAACCAAGGCATGCCACCTCCGGGAATCTCTATCAGTAACTCGTGCCCTGCTAACCTGCCCAACATTAAAAGGGAATTCTCTGTTACTACATCTCCTGCCATGATGCACATGATGGACAAGCCCAGCTCCTGTAGCAAGTTTGAGAGCTATCAAAGGCCTGAAGGGTTTCCTGTGGAGGCAGAAGTTCGCGCTCTTGCAAAGGAAAGGCAAAAAAAGGACAACCATAACTTAATTGAGAGGCGACGGAGATTCAACATTAACGATCGAATCAAAGAACTGGGGACTCTGATTCCTAAATCGAATGACCCGGACATGCGCTGGAACAAGGGCACTATTCTGAAGGCCTCTGTGGATTACATCAGGAAACTTCAGAGAGAGCAGCAGCGTGCCAAAGAGCTGGAGAACCGTCAGAAGAAGCTGGAACACGCCAACCGCCACCTGATGCTCAGGATACAGGAGCTGGAAATCCAGGCTCGTGCTCACGGACTGGCCATCGTCTCGTCTACACTCTGCGCCTCAGAGCTAGCGGCCCGGGCCATCAAACAGGAGCCGGTCCTGGGCAACTGCACCCAGGACATGTACCCTCACGCACACCCTTCTTGCCCCGACATGGGCCGGTCCAGCACCCTAGACCTAAACGACGGCGCAATCACCTTTAACGACTCTAGCACTTCCAGCGACGTTTACGGTCTCATCCCGAAGGCGCACGGCACTAAACTCGACGACATCCTGATGGACGACACATTGTCATCTGTAGCAACAAGCGACCCGCTCCTCAACTCCATCTCGTCCGGAGCCTCGACCGCAAGCAGCTGTAAGGACAGCGTGAACATGGAGGAAAACGAGCATGTTTGTTAGTGCGAGGAAACCTTCGTTTGGCTGGTCATTGTTGTGTTTTTCCCACAACACCGTTGACCGCCAAAGAAGAAACGCGGCTTATTTcgaaaataatactatttttatgtttacacttgttttattttattgtattttaaccTTATTCCAGTTTCGTCTGCCCAAATTTCATTGtgttataataatagcaaaataatCAAGGTCagtatcataaaaaaaaaagattgattcGTGTAACTTCACATAGGTGTATCAGAGTACGATTTAATCAACTTTGGGATAATATAAAAGTGCACTTGAAAGGTGATTTCTTTGGTTGTACAGTAGCGTGTTTGCGCACAGTTTAGAAGAATATTTCtcttcttttaatatatatatccttGTAAAGGAATGACTTGAGCAGAATGCTTCCCATTTAACGTGTAGATATTAAAGTGACGttcaaagggatagttcacccaaaaatgaatgctcttaatttattcaccctcaggtTATCCAAGATATAGGTGACTTTTTTCTtgagtaaaacagtaaaaaagatTTTCAGCGGAAACTGTGGACATTTGGGGGTTTAGAAGGGCTACCATCACTTTAAAAAGTCAAGGAAACGTATATagtcaacatgaaattaatACCCATAATGATATATTGAGGTCTTATGAAGCAAAGCGATCAGTATGTGCAAGAAACTGCATATTATTATCCAGAGCCTCAGACAAACGGTCCAGAGAGATGTTCAGTTAgcaaatgaatcattcttttggACTGACTCTTTAGTGAACTAGTCGAACCAATCAACCAAATCAGACTCTACCATCTAAAAGAGTTCGTGACTCAAGCAGCACAGATTTACATGTCAGCCAATCGAAATTCACTTTCAAATATCTGACAGTCACTTCGACTCGAAACGAGCCAAAACTGTGGCAGGTATCTGATCCTGTAGTGAATGAACCGATTCGTCCAACAGTCGCTGAACTGAAGAAACAGTTAGACTGAAGACCGCTCGTATGAGCACGCGTCAAACAAGCACTTAAATGAAGGAGCCAAATGATAGTTTTTACGGTTCCTTATTGTAAAAAAAGTGAAGgaactaaatttattttattttataaaattttttttcatttttgggtgaaatgctCCCTTAGCATAGCTACATTAATCGTAACCAATTCATAGATGTTGTGCAAATTTCTGTTGAATGTTGAGGAAACTTTTGAGCAGACGCTCTATAAATCGTATCTTCCAGATGAAAACGCACAAAAACAATAGACGGACAAAGCATGCTGATCTGAAACAGCTGACCcaaaatgatttgattcagtTATTAATCATTGGCAATATTCTCTCAGTATTAATGTTTCTGGTCCAGGAGAATTTCACGTAGCACAGTGGATTTGTGGAACAATCTTAAGACCGTGAAGAAATGCACACGTGGAAGGACGGTTTGCAAACAGCATTTGGAAAAATCCTACGGATTTCCAGATGTCCCGTAGAATGTGCCAAGCAATAAGCAATATTCAGTTTTCCCAGCTGAAAGCCTTCAAAAACTCTTCTTGCGTTTATATGCAGTGCCTATATAGTTATGCCTATATAGTAATGTATTTCACCTTGTGCATTTCTTAATAAACCTTGAGGATGCATTTTGACATGTGCATCTCACAGtgcataatccataataatgtgaaatgattttttaaCACATATTTCATGACTAAATAACTAgtcataaaataattcaattccAATTTATTACcctctaaaacattttttcatcattttaattcatttctgttttaatatgccatacattttaattacactaGCCcaggtttgtttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaggaCAAAGATCTGGGGATTTTTATATATTGGTGGCAAAAACACTGGAAGAATGATAATATGTTGAagactaaaaaagaaaagacaaagaaaaaatattttatatttaattctaacacttgtttgggttttttttattcttacttGGTGTAAAATGACTGACTATGCTTGTAATAATAAGCTGTACTGTTACTGTATATTTCTGCTGTGCTCAAGTCAGATGTACTGATGTTTGCCTTTGAGTAGCATTCAACTTGTGCCACTATTTTGATCACGTAGGTGCAACTATTATGTGTTGTTTCATAGAACTATGCAAAGATAACTTTCAGTTGAGAAATCAACCTGTATGTAATGGAAAGATGTTGTAAGAGTTTAGCGTAGGTAACAAAGTCAGACCACTGTAAAGTGCCTTACAAATCTGTcacttaaagcaatagttcacccaaaacttccaaacacgaacagcatttttttttttttatggtggaACACCGAAAGAGATATTTAGCAGAGaattcatgctgctcttttccatgcatTGAAAGTGAATGGGGAATAGAACTTATGGGGgccatcacaaaaaaaaaaaaaaaaaaaacttaacttaaTATCCCACAATTCtgcaattaatgcaaaaatggtTAGAAatgctaaactaaaaaaaactttctcgTAATTTCAAGTTTACATCTCgccatgttttttgtttgtttgttgttttttgcaaaaaaaaaagaaaaaaaaaggcaattgcgatatgtatgtatatatctcaCAACGTCACACTTCTTAGAATTAagtttgtctttcatttcagtttttgttcccgaataaaaaaatacggtaaaaaaCAGTAATTTGCAGTATTTTGTCGCAATTCAATAAtagcacctttttttttacaatttggaCGTTTGTTCTCAgttttgtgagtttatatcatgcaattctgagtttacatgttgcaattcagtttatttgtttgtgccgcaaaatgaaaaaatttaccatttttattttcttgtaattAGATCCATGCTGATCGCGGGGACTGCCAATTTCAAAAAAGACTAAAGAAACCCCCTGAATTCGTAAACATGGGTTTGGAGCGATGTGCGAGTAAGAAGGAGATCGTTCTAATTGTcaattttgtgtgaactattcctttaaatgaaatgctctATTCTGTATTTGTGACTTTAGACTTTAGGCAGTGGGACCTAACGGGTTCAGTCCTCGGGTGAAGTAGAGGGGACGATCTCTCAGTAGGACTTTGTTTTGTAGTGCTTCGAGGCACTGCGGTGTATTACATAAACTCCCTTGCCCCAATAGACAGAAACTACTGAAAGTCGTCCTCTGAATGTAACGTTACAGTGTTGACTACTAAAATGTTGCCAAATTCCAAGTGGAGTCTAAATATGCAGTGAAACTGTTATGTATCTCGTTGTGGATTTATAGCAAAACTGGCTGTTGCAATTTCTTCTTCCGAGCAATAATTTAGACAATCAGGTAACGGGTAAAGCACAAGGCTCCTGTATGAACGCGTACGCATCCGTGACATCAACGAAAGGTGCCTTCAAAACAGGCTTCCATTGAACTTCAACCAAACGTCTTTTAATATCAAACACAGTCTGTCTTTTATAGAAGTGTCTCGGCTAAAGATGGTTTTCGTTTTGTTAATATacttttgtattatatttttgaagCTTAACCAAACATTATTTAAGAAAGGAGCTTGTAAAGTTGATTTTTTTGGGGTTGAATCGAATTTCTTATAAAGCGTTAATTTCCTATGAATTCAGTACTGGAAGCCGGCCCACTTTAAACCTGTTGGGAAAGTCACCTTTCACTCAAAGCGCGAAGCTTCCGCTGAGAGGCTTCGTGAGGAACGTAGCATTTCATTGTTGGGTTTTAAAGCTTGTCAAGTGTATGAAAATGTTACAGACGTTGAAATAAAACTGAGTGGTTTTCGCAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005654 nucleoplasm cellular_component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09455 MITF; microphthalmia-associated transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247847.1 lncRNA upstream 19630 3049398 ~ 3051276 (+) True LOC122328883
XR_006247846.1 lncRNA upstream 48935 3011181 ~ 3021971 (+) False LOC122328882
XR_006247845.1 lncRNA upstream 48935 3015192 ~ 3021971 (+) True LOC122328882
TU228686 lncRNA upstream 113771 2947774 ~ 2957135 (+) True G154425
TU228683 lncRNA upstream 121448 2945990 ~ 2949458 (+) False G154424
TU228801 lncRNA downstream 16342 3112522 ~ 3113171 (+) True G154487
TU228833 lncRNA downstream 110302 3206482 ~ 3206688 (+) True G154517
TU228883 lncRNA downstream 146035 3242215 ~ 3242722 (+) True G154561
XR_006247851.1 lncRNA downstream 218328 3314508 ~ 3315260 (+) True LOC122328887
TU228908 lncRNA downstream 298743 3394923 ~ 3395407 (+) True G154582
XM_043224874.1 mRNA upstream 60889 2995169 ~ 3010017 (+) False rbm10
XM_043224941.1 mRNA downstream 37351 3133531 ~ 3137978 (+) True twist3
XM_043224877.1 mRNA downstream 223261 3319441 ~ 3352334 (+) True LOC122328845
XM_043224878.1 mRNA downstream 223261 3319441 ~ 3352334 (+) False LOC122328845
XM_043224879.1 mRNA downstream 223261 3319441 ~ 3352334 (+) False LOC122328845
XM_043224936.1 mRNA downstream 335143 3431323 ~ 3433604 (+) True taf11
XR_006247841.1 other upstream 61296 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 61428 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 114181 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 114181 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 119817 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 598472 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 598472 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 3496426 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 4129814 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 4203099 7299279 ~ 7304358 (+) False tcea2

Expression Profile