RNA id: TU232041


Basic Information

Item Value
RNA id TU232041
length 1986
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G156685
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11540640 ~ 11555919 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCGCAATTGTGTGTCAACACGGTTCAACACAATTCAGATTAAAATCCAGACCATGTTAACCCATCTATAAGTTTCAAGTGAAGTTCTCTATGTGATATGCGGCTCGAATCTCTGCTATAACATACAATGGGGGATTTAACCGGTGCCAGAGATATTCTGTGCAGTTTATATATTGCTTTCTAACTACTCTTCATCCTGACGACATTATTAAAGGTGCTGTAAGCAGTTGGGAATCTGGGAATATTAAACATGAACGTGACTCTAATCTGACAGATATCACTGAAATAGGTGTCCTGAGAAATCACACCTGTCTCTGTGACAGCTCTAGaatctgtaaacaaaaacacaattaaacattCAGGGGGCGCCAGCGCtatttcagccaatcagaaacattCTCTATCAGTTAACCGTTCTTGTCTCTGaaccgattaaaaaaaaaacgtttaaaatgaGAATAATAGTGAAGCACTTACAGCACCTTtaaggagaaaaacaaaatcctgtcatcattacCCTCATATCATCCCAAATCTGTAGGAATTCTTTTGTCAGTCATACAGATATAGAATGACGTGAAGAATGATGCCAGAATTCACATTTcttttaggtgaactgtccctttaagacaggCAACTGAAATTTCTTTCGAATGTTATCATCAACATTTTACACAAAGCTTTAATCAACAGCCATCAATAGCCTAGTTATGAATAAATGTCTCAACTCACACAGGTTCATGTCTACAGTGCTCATACAACATCAATTCTATAGTCCCATAGTTCTTCACAGAATAAACGTGGATAACAGTTACCTGTTTTTCAAAGTGTAACAACAGAGGCTGATTCAGTGCGTGGTCGACAACAGTACGCTCGAGGGTTTAACAGCTTTCGCTGTGTGGATGGGTGCAGTGTAATCTCATGGGACATTGTGAGTTCCTCTGGGCCGTCCGTGTGTCTCTGCTCATCTACCTCATTATGAAACAATCCTCCATGGCAATATTTCAGATGTGGAAAAGCAAGaactaaaattgcattttctgCTCAGGGCTAAAACCGAGACTTATCTGTCTAGATTAGAGATTATGCAGCGCGATAATGTGGATTTTGACTGATTTCCTTATGGAGATTATGAGTCAGAAGCTGAAATGCGGCACTGCTTGTTGAAGACTGTCAGAGGCCATCAGCTACCACTAATACACCACTACATGACGGCACAACATCATAAAAAACAACAGACCATCTCAACAGCTCCTCAGATTACGGGTCAACATGACAACCTGTCACCTcacaaagcaacaaaaacaaacaggttAACCCACGAAACACTGGAGAAACTGCATTTAGTTCAACAACCCACCACAGAGAATATTCAGAACATGGAGAAACGTGAAAAATCACTGCAAAACAACTGCTACTTAGAGTTTAGGTGATCATACACTGGGTTTACTCCAAAGTGATTTCCATACAAATAAGGGTAAAAGACGAAATGCATTTGaacatgtttacataatataaaaaaagcctgGAGTCCAACTATTTGAATTCCctaaagtaatttaaagcacTGTGGAGAGGTCTGAACGACACCTCGGAAATAAACAAATCGAGTAAAACATTTCGCACCTCTAGATATGAGAATATGAGCTCACTTCACCCACATTCGGCGGCGCTCAGATCGTGGTCAAATGAATTCCGAAAACAGCCTGTTTAACATcctgagacatttttttttttccatgagaGTAAAGAAGTTCAGTGTTTCCATTTCGTAGAGGCAGCAGAAATGAGGCTCGAGAGCGAAAGCGAAAAATACTCTGCCAAGATGAGTCATGTGTCTCGTTGCAAACTTCgtagacaagaaaaaaatagaggTATATTTCTCTCGGCATTATCTCTTTTCCTCAGATCATCTATTCACACGTTGTCGTCTCCTGCGGTGCTGGAGGGTGTTTCGAATTTGAACCTCTGTGACTGTGATGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232039 lncRNA upstream 325 11539615 ~ 11540315 (+) True G156684
TU232037 lncRNA upstream 5723 11534590 ~ 11534917 (+) True G156682
TU232036 lncRNA upstream 7442 11532635 ~ 11533198 (+) True G156681
TU231969 lncRNA upstream 207713 11331742 ~ 11332927 (+) True G156633
TU231915 lncRNA upstream 227037 11219035 ~ 11313603 (+) True G156592
TU232052 lncRNA downstream 58211 11614130 ~ 11651107 (+) True G156690
TU232064 lncRNA downstream 97461 11653380 ~ 11654160 (+) True G156698
TU232065 lncRNA downstream 98336 11654255 ~ 11654617 (+) True G156699
TU232066 lncRNA downstream 98997 11654916 ~ 11655316 (+) True G156700
TU232067 lncRNA downstream 99876 11655795 ~ 11656380 (+) True G156701
XM_043224590.1 mRNA upstream 10979 11527406 ~ 11529661 (+) True apobec2b
XM_043224589.1 mRNA upstream 15772 11520750 ~ 11524868 (+) True si:dkey-109j17.5
XM_043224592.1 mRNA upstream 20035 11518832 ~ 11520605 (+) True ccdc115
XM_043224056.1 mRNA upstream 29679 11507968 ~ 11510961 (+) True fkbpl
XM_043224670.1 mRNA upstream 95896 11443293 ~ 11444744 (+) True LOC122328759
XM_043224284.1 mRNA downstream 78357 11634276 ~ 11638023 (+) True LOC122328536
XM_043224285.1 mRNA downstream 78357 11634276 ~ 11638023 (+) False LOC122328536
XM_043224116.1 mRNA downstream 129793 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043225498.1 mRNA downstream 139897 11695816 ~ 11704390 (+) True slmapb
XM_043225499.1 mRNA downstream 139897 11695816 ~ 11704390 (+) False slmapb
unassigned_transcript_2622 other upstream 22104 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 24769 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 26794 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 27942 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 363607 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2498445 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2500766 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2743782 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 3128071 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 3156228 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU17885 True 1138 lncRNA 0.39 2 CI01000001 5606519 ~ 5612278 (+)
tiger barb (Puntius tetrazona) TU17885 True 1135 lncRNA 0.52 2 NC_056700.1 14691177 ~ 14699019 (-)