RNA id: XM_043224670.1


Basic Information

Item Value
RNA id XM_043224670.1
length 879
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC122328759
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11441897 ~ 11444744 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATTTAGCCTAATTCATTACATACCTTCATATCAATGCTAACCGACATTATTCAGATGATTTATTCTTACGCAGTTTAACTCGGACTTTTCCTCGAatttagcaaattaaaaaaattataacATGCTGCACTTGACAGCAGGACGTGTAGTGGGGCTTCTGTCCAGACGGGGAGTAGCTGCTTTCAGCTCCAGCGCGGTCAAGATGGCCAGTCACgGTGGGGTGACCGAACAGACGGACATGTCTTTACCCCTGTACTGGGACCGTCTGGACACTCCTCTGCCTGACAGACCATACAAAGATACCCTCAGCGCTGCAGACAAGAGCctgaaggagaaggagaagggcCCCTGGAACAGCCTTTCCAAAGAGGAGAAGCTTGCTTTGTACAGAATTATGTTTAACGAGACGTACGCTGAGATGAAGAAACCAACTGGTGAGTGGAAGACGGTCTTTGGTGGCATCTTTTTCTTCATTGGGTTTACTGGCCTGGTTGTTCTCTGGCAAACGTACTACGtataTCCCCCTCACCCTCGTACCCTGGATGACGAATGGCAGGCTATGCAGGTGAAGCGGATGCTGGACATGCGGGTGAACCCCGTGGAGGGTTTTTCAGCCAAATGGGACTATGAGAAGGGCCAGTGGAAATAGATGAATAGAAATGCAGCTGTGAGCAAAAGATCAAAGCCTTGCTACTTATCTGCCGTTCTCCTTTGGCAGTCTTCATGCATTACTATGCCCTCCTTTTGTGAACATTTGAATATTATCCAGTGGGCAACCATGTTAAAATCTGAAGAAGTGAGGAAAATGAATTCATAACACTGAATGAATCGCAAGTGTTTCCTCTTCACTGGCGGAAGTAAAACTTGAGAGAAATTA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231969 lncRNA upstream 110366 11331742 ~ 11332927 (+) True G156633
TU231915 lncRNA upstream 129690 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA upstream 131806 11245551 ~ 11311487 (+) True G156599
TU231912 lncRNA upstream 200257 11211041 ~ 11243036 (+) True G156590
TU231883 lncRNA upstream 291246 11148863 ~ 11152047 (+) True G156568
TU232036 lncRNA downstream 87891 11532635 ~ 11533198 (+) True G156681
TU232037 lncRNA downstream 89846 11534590 ~ 11534917 (+) True G156682
TU232039 lncRNA downstream 94871 11539615 ~ 11540315 (+) True G156684
TU232041 lncRNA downstream 95896 11540640 ~ 11555919 (+) True G156685
TU232052 lncRNA downstream 169386 11614130 ~ 11651107 (+) True G156690
XM_043225287.1 mRNA upstream 53007 11387916 ~ 11390286 (+) True emp3b
XM_043225003.1 mRNA upstream 65277 11361882 ~ 11378016 (+) False myh7bb
XM_043224056.1 mRNA downstream 63224 11507968 ~ 11510961 (+) True fkbpl
XM_043224592.1 mRNA downstream 74088 11518832 ~ 11520605 (+) True ccdc115
XM_043224589.1 mRNA downstream 76006 11520750 ~ 11524868 (+) True si:dkey-109j17.5
XM_043224590.1 mRNA downstream 82662 11527406 ~ 11529661 (+) True apobec2b
XM_043224284.1 mRNA downstream 189532 11634276 ~ 11638023 (+) True LOC122328536
TU231904 other upstream 266260 11174421 ~ 11177033 (+) True G156586
XR_006247905.1 other upstream 367556 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 368127 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 519305 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 541153 10902069 ~ 10902140 (+) True trnae-cuc_40
unassigned_transcript_2618 other downstream 67881 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 69029 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 71055 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 73721 11518465 ~ 11518536 (+) True trnae-uuc_33
XR_006247901.1 other downstream 2609620 14054364 ~ 14054500 (+) True LOC122329331

Expression Profile