RNA id: XM_043224589.1


Basic Information

Item Value
RNA id XM_043224589.1
length 3743
RNA type mRNA
GC content 0.44
exon number 2
gene id si:dkey-109j17.5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11520750 ~ 11524868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATGCTATGGCGTCTTGCGTGTTAAATGTAATTCTTGTCAACCTACCTAACTTTTCTTCCTTCCCGATTTCTGCCGCAACCTCAAAAAGCGTAAAAGAAGTGGCAAACGTGCACGAGCAGTAAATATCAGGCGCGTCCTCGCCTCTTCTCGTCTCTTTGGgctataaaaatcatttaataactgTCTTAACTCAACGTCCAAAACGTTAAACGCGCAAACCACGTTCTTTGTTGCGGTTACTTCGTTAGCCTTGGACGAAGTAGCAGCAAGCGCCCGTTAAAgaataaaaacctaaattctCCAAACGGAGGCGgaatggtaaataaataaataaattccccGTTCGCCGTCTACTTCCTGGTGTTCGTCGGGAAAGAGCTGCTAGCGGATAGCGATGTTTACGGTCGGGTCCGACACCGGGCATTATACCGTTCGCGCGCTCGCACAGATTTGACGGACGTCTGTTTTGGTGTTTTTCCTGAAACGTGTGACCGAGGAGATGTTTTCACAATGACAGGACGATGCGATCAGTGTCGGACCAGGTGAACGCGCTATCTCGGTCAGATTACCATCCTCTTATCTCCATGCTGAGACGAGGCTGTTAACATCGAGTCCCAAAAGCTAGACCAATATTTGATAAAGCACGAAAGAGGATATCGCGCTGTTCTCGTTTGCAAGTGTGTTAGGCTGCTCTTACTGTATTGTCGCTGATATCGTGGAAGATTTGAAGATCACTGATGGCGTCAAAATCTAGGGTCTCCATTCTGGATTACTTCAATATCGTATGTGAGGGAGAAAATGGCAAAATTGAATCAAACTGCAAAGCTTGTGGCACAAGGATTCAGGCTAAACGAACAGTCACTTCTAACTTTGTTACGCATTTAAAGCGCAAACATCAAGCCATGTATGATGAGTTTGTGAGGAAGAAAGACGTGAAAAGGGAGGCAATGCAGATGTGTACCGGCCCTCCAAGTGGTCGGGTGATCTCTCAAAGTGGAGCTGGATTGAACAAATTTGACTACAGTGATCCTCGCCAATCCCTAATTTCAGAAGCCATCGCCAAGATGATCATCCGAGACCTGCAGCCGGCACAGATAGTGGAATATGAGGGTTTCCGTGAGCTTCTTCAGCTCCTGGAGCCCCGTTACATACCGGTACCGTGCCATTATATACAACAGCAGCTCCTGCCAGCCTATGTCTCCCAAGTGCAACTAGCTGCCAAACAGGCTCTAAAAGGAGCCGAGTCCTGCAGTGTGACCCTTGACCTGTGGAGAAGCAGCTCTGTGGGTAATAACAGTGGTGCTGGGTTTCTTGGAGTCACTTGTCATTTCATTAACGCAGACTGGCACATCAGATCTGCTCTTTTGGCATGCTTACCTCTTCCAGACCATGGCAACACTCAGCAAATACTCAGCGAGTTTGACGAGATCTCAGAGTCCCATGGCATGTCTGGCAAAGTGTTCAGAGTCGTCGCAGACATGTTGCCCTGTGAAAACAGATCGGCTTTCCGCCTTCCTGGGTTCAGTCTCATTGGAAATGGTGAAGAAGATGAGGAATATGGTAGCGATGAAGAGTCTAGTGCAGGGGAAGCCAAAGAAGCCATTAGTAGCAACGAGAACAAATCTTTAGATCAGTGTCTTGGTCGAAGTAGGATAGACTGCTTTGCTCGATTACTAGCTCAGTGTGTTAAGGAAGGAGTTTGCGCTTCCCCTCAAATATCAGTACTTCTAAACAAAGGAGCCCACCTGTATAATTACATAACTGCTACAGTGGCTCCTGAAAAACTTGTCCAAGTGTTCGGCTCCAGCACCTCAACAAACTGGCAAAGACCATCATCCACAGACAAGTGGAACGCTCAGTTGAAAATACTGCGGCAAATGGTAGAGTCAATGGATTTTCTTGAAGACATTGTGGATAGGAATGACCTAGTTCTCAGTAGCTTAGAAAAAGCAGAGCTACGGGAGCTGGTTGAGGTGTTGGAGCCTTTTGAGGAGGCCTCAGACATGGTCCAAGGAGACAAACATGTGTCCATCAGCCTAGCCCTGCCCTGTGTGCTCGGTCTGCGCAAGCACCTGGCTGAGGTCGTAACTCACCAGTGCTCAGGGATCGTGATGGGACTGTCTCAAGCTCTGGACCGCAGACTCGCAGGCATTCTTGAAGACCCTCTTTATGTAACGGCAACCACCCTGGACCCACAGTTCAAGCTGTCCTGGAGCAGTGACAGCGACTGGCACAAACAGGTGCTGCTGGAAGAGGTAGGAAAGCATACTCGGCCTTTGAGTCCACTAGAACATCACTCAGAGGCCCAGCCGTCACCGTCCAAACGATGCAAGCTGTTCTCTTTCATTAAGCAGAGGCCGACCGCCCAGGCCAAGACCGTGGAGCAGGAGCTGTCCACATATCTCCACGAAGAACCCACAGATGAGGATCCACTACAATACTGGAAACGCAAGTCCATCGATTTCCCCCTGCTCTCCCAAGTAGCCAAAAAAGTTTTTACCGTGCCAGCAACAACCACTTCAGTGGACCAGATATTTAACCTGGTTAGCAAGACGCTCAGACCAGAGCAATGCCGACTTCTGCCAAAAAACTTGGACACGCTGATTTACTTGAAGGCTAACTACAGGATACTTTGGTCCTGAATGCAAAGAGAGctcttttctttgaattttcTTTGTACTGATATCAAACCAAACACCTCAAATGCAAAATGGGGATTGTGCCTGATATATATCTATCTAAAAAACTATTGTTGTcagcaaatattattatttttttggttagGTACAAAGGATAGGCCTAAATTAGATAAATTAAGTACCCATTATGGgtaacattttataatcactttcatctatctatctatctgtttgaAAATCTAATGCAATCTaatgaaaaaggaaatgaaagttattataaaatgttaaccTATTATGACTCATTATCAGATCctgtttgctttattaaagagttttataaaacattgttcTGTCAACTCACTTTCACTACCCTAGAACGCAATAGGATCATACAAGTGCAGTGCGTACTGTACTTACCCTTGATTAATTAAGTATTTACCTAACAATTATCCTTCAAAGCATGATGTAGAACCCCGGAAAACACTATTCTTGCAGCCAAATGCTTTCTCAGAACACctttaacaatattacatttcCAGCTAAATTAAACATCGTTATTAAACATTTGGTGTATAATAGTTAGCTTTATATTAATCTAAGATGAAAAGAATTGGTCAAATAGAGTTTCAGTGTGGCTGCCAGGTTTTTTGTGTGGGTTCTTTGTGTACAAAACCCACCGGGTAGAAAGCTGCAGGCAGGTTCtgtaattgaaaataattacatttcaggCCTATGGGGAATCGCTGAACGCTGACTGTGGACTGCAGTCTTTCCTAGCTTGGAGGGCTGAACGGAGAACAAGCAAGCCTGTGGGATATTAAGAAGAGTTGTTGTGCATTAAGGACCTTTTTGTTGTGAAAAAGACTTTTCCATTTCAGTAAAAGTGTTTGTTATCAAACTTGACGTTTTGTCCCGTCATAACTGCTGGGTCAGACAGTAATATACCGAAGGCCAGGCAATTTGAAGGTTTTTATACTACGATCTCAGATGTCAGTGTGTGCATTTACAGTTATAACTGCAGCACACTTGTGCATCTCAATAGAGTTTATGAGTGCTTGCATTCTGATCATGTGGAGAAGAAAACAGCAGAAAGACATTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231969 lncRNA upstream 187823 11331742 ~ 11332927 (+) True G156633
TU231915 lncRNA upstream 207147 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA upstream 209263 11245551 ~ 11311487 (+) True G156599
TU231912 lncRNA upstream 277714 11211041 ~ 11243036 (+) True G156590
TU231883 lncRNA upstream 368703 11148863 ~ 11152047 (+) True G156568
TU232036 lncRNA downstream 7767 11532635 ~ 11533198 (+) True G156681
TU232037 lncRNA downstream 9722 11534590 ~ 11534917 (+) True G156682
TU232039 lncRNA downstream 14747 11539615 ~ 11540315 (+) True G156684
TU232041 lncRNA downstream 15772 11540640 ~ 11555919 (+) True G156685
TU232052 lncRNA downstream 89262 11614130 ~ 11651107 (+) True G156690
XM_043224592.1 mRNA upstream 145 11518832 ~ 11520605 (+) True ccdc115
XM_043224056.1 mRNA upstream 9789 11507968 ~ 11510961 (+) True fkbpl
XM_043224671.1 mRNA upstream 76006 11441897 ~ 11444744 (+) False LOC122328759
XM_043224669.1 mRNA upstream 76006 11441937 ~ 11444744 (+) False LOC122328759
XM_043224670.1 mRNA upstream 76006 11443293 ~ 11444744 (+) True LOC122328759
XM_043224590.1 mRNA downstream 2538 11527406 ~ 11529661 (+) True apobec2b
XM_043224284.1 mRNA downstream 109408 11634276 ~ 11638023 (+) True LOC122328536
XM_043224285.1 mRNA downstream 109408 11634276 ~ 11638023 (+) False LOC122328536
XM_043224116.1 mRNA downstream 160844 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043225498.1 mRNA downstream 170948 11695816 ~ 11704390 (+) True slmapb
unassigned_transcript_2622 other upstream 2214 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 4879 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 6904 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 8052 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 343717 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2529496 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2531817 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2774833 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 3159122 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 3187279 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile