RNA id: XM_043235537.1


Basic Information

Item Value
RNA id XM_043235537.1
length 2127
RNA type mRNA
GC content 0.48
exon number 11
gene id strada
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11740279 ~ 11749928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCTGTActctttatgtgtttttgaaagtatTGCTACCTGTCATCAGCATCCCCAGGATCCATGTCTTTTTTGCGCTGGGTGTCAGAGAAACTCAGTGTGGAAAGCCTGAGGGATCTGGAGTTATTTGGAGGCCCATGAGGACAGTCAAGAGTCTCTGAGCCCTCTCCCACGCAGAGACACCATGGGAAGCTTCCTTCCAGACAACAGCGCCTATGAGCTGCACGCTGTCATAGGTCGAGGTTTGGAGGACTTGATGACAGTGAATCTGGCCAGTTACAAACCCACAGGAGAGTATGTGGCCATCCGCCGCATTGACCTGGATTCCTGTACCAATGACATGGTCAGTTACTTACAGGGAGAGCTGCATGTGTCTAAGCTGTTCCACCACCCCTGTATCCTCCCCTACAAGAGCGTCTTCATCACAGAGAATGAGCTGTGGGTGATCACACCCTTCATGGCCTATGGATCTGCGCGAGACTTGATCAGCACACATTTTACTGACGGTTTGATTGAGCAGACAATAGCCTACATCCTGCTGGGGGTGCTGAGAGCGCTGGAGTACATACATCAGATGGGCTACGTTCACCGTAGTGTGAAGGCAAGCCACATCCTGATTGCAGCAGATGGACAGGTGTATCTGTCCGGTCTCAGGAGCATCTTCAGCTTGATCCGTCACGGGCAGAGAGCACGTGTTGTACACGATTTTCCCCAGTACAGTGTTAAAGTACTACCTTGGCTCAGTCCAGAGGTTCTGCAGCAGAATCTTCAGGGATATGACTTCCGCTCAGACATTTACAGTTTGGGCATCACTGCATGTGAGCTAGCTAATGGACACGTGCCCTTTAAAGACATGCCTGCTACGCAGATGTTGTTAGAGAAGTTGAACGGCACAGTCCCCTGCCTGCTGGACACGACCACCATCCCCCCTGAAGAACTGAGCATGAAACCGTCTCGCTCCGGGGCCGACTCTGGGATCTGCGAGGGCCCCGGCGCCGGAGGAGCTCGCCACACTAACGGAGAGCCCTCATCGTCTTCTGGAGGAAACCCCTACAGCCGAACATTCAGTCCTCACTTTCATGCCTTTGTGGAACTTTGTCTACAAAGAGATCCTGAGAAAAGACCCTCTGCCAGCTCTCTGATAGGCCATTCCTTCTTCAAGCAGATAAAGCGCAGACCATCCGAGGCTCTTCCTGAGCTCCTGCGTCCAGTTTCTCCAATCAGCAGCCTAGATGGCATGCAGCCTCAGGATTCACCCACTGGATTGGCCAGTCTGGAGTCTGATCTCAGCCAGCTGGATGTGGATGACTGGGACTTTTGACATGAAACGGATGAGAAGTGAAGGAACGATGGCTGGAACTGAAAGGGAGGCGTTACCATAGGACTCTTAACGAgaattgattgtttttgttgtgttttaaaaggGAGAAAAAGGGAAGGCCAGTGCTAAGTGAATGTGatatagacattttaaagagCTTCTAAGATGTTACAAGAGACTCTGGAACGTTTCTTGTTGTCTTTTGTGATTTGTGCACATCACTGAAACTACAAGGACAGActataaaaagagaaatgaaaaaccAGCAGCCGCCATAGCCTTGATAATGCTTTCAGAAGCATGAACTGAAGCCTGAGGCATGCACTGCGCACTCTTACCGACTGGCCATGTGACAGTGGTGATCACTTGAGGCCACCGAAGCCTGTTCCGTTTCACCTGAACTAATGACACTCTATGAATGTCTTAAAACTTAAGCAAAACAGGTTCACAGCTGAACTCTCACGGCTCCTAGCATATTTTCCAATGAAGCATAAAGAGCTTTCAGTAAAGTCAAACTAAACATAGAACTGTTCAGTTTATGGGTGGATTGTGGAGATTTGAAAGAACCAAGCTTCTTCCCTCAGCACAAATGTTGACGCCACCAGAAATATGCTAGAGGGGAAGATTTAGTTTTTGCCTGTTATCTGGTGTagttattagttttatattagCTGCATTTCTGATGAGATTCATTTTTGTTCTTGGCATGCTTTACAGGAGGAAGTACTTCAGTGGACcttttgtgtattttcagcatatttACCTCTTGGTCAAATGGAATAAATGTTGCAACTGCACAAATGTCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28582 lncRNA upstream 21232 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 22039 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 299473 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 303614 11436944 ~ 11437197 (+) True G19123
TU28233 lncRNA upstream 360021 11380273 ~ 11380790 (+) True G18946
XR_006249757.1 lncRNA downstream 84844 11834772 ~ 11835253 (+) True LOC122338225
TU28625 lncRNA downstream 141975 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 217720 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 292956 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 322791 12072719 ~ 12073073 (+) True G19255
XM_043234588.1 mRNA upstream 95368 11640702 ~ 11645443 (+) True dcaf7
XM_043234596.1 mRNA upstream 95368 11640702 ~ 11645443 (+) False dcaf7
XM_043235667.1 mRNA upstream 111529 11616195 ~ 11629282 (+) False mylk5
XM_043235666.1 mRNA upstream 111529 11616196 ~ 11629282 (+) True mylk5
XM_043235982.1 mRNA upstream 134634 11603674 ~ 11606177 (+) True fzd2
XM_043235629.1 mRNA downstream 4320 11754248 ~ 11762534 (+) True snrnp70
XM_043235632.1 mRNA downstream 12744 11762672 ~ 11767501 (+) True lin7b
XM_043235630.1 mRNA downstream 17960 11767888 ~ 11772504 (+) True zgc:193811
XM_043235631.1 mRNA downstream 18155 11768083 ~ 11772504 (+) False zgc:193811
XM_043233830.1 mRNA downstream 23272 11773200 ~ 11825434 (+) False kcnc3a
TU28236 other upstream 371059 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 404986 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 578368 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 958958 10752759 ~ 10781853 (+) False kcna7
XR_006249731.1 other downstream 23273 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 23273 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 23273 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 342675 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 553436 12303364 ~ 12312990 (+) False nbr1b

Expression Profile