RNA id: TU54628


Basic Information

Item Value
RNA id TU54628
length 345
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G37038
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15859759 ~ 15860103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttccttaaaaaaaagccaaaatatcTGTCACTTATAACTCTGTTATATCAAACACCACTTCAGCCAGACGTATGtgtttttcatatattatatattatactgtatttgatatcaaattaataataatgttaaacaagGTGAATGATTGGCAATGGTAATGTAATGATTGGTAATGTACCCTGCATCATGtagtaaaatgcatgctatGCCTAATTTTCTATGTTCTTTGAATTtctgaaagtaaaataatacaacataaaaatgtatgatcAGGGAAAGCTGAAGATTACCTGCATCTCAAATGATTTTTCTATATGCCTACAACCAAATACAATCCATGTTCT

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54555 lncRNA upstream 36008 15821892 ~ 15823751 (+) True G36993
TU54610 lncRNA upstream 44694 15814853 ~ 15815065 (+) True G37024
TU54606 lncRNA upstream 45511 15813103 ~ 15814248 (+) True G37023
TU54607 lncRNA upstream 45854 15813103 ~ 15813905 (+) False G37023
TU54542 lncRNA upstream 146565 15712977 ~ 15713194 (+) True G36984
TU54639 lncRNA downstream 58403 15918506 ~ 15919285 (+) True G37047
TU54775 lncRNA downstream 192929 16053032 ~ 16053819 (+) True G37123
TU54772 lncRNA downstream 193143 16053246 ~ 16053897 (+) False G37123
TU54773 lncRNA downstream 193143 16053246 ~ 16053819 (+) False G37123
TU54774 lncRNA downstream 193143 16053246 ~ 16054008 (+) False G37123
XM_043238895.1 mRNA upstream 38025 15815277 ~ 15821734 (+) True tbx16l
XM_043238748.1 mRNA upstream 47742 15807811 ~ 15812017 (+) True eral1
XM_043238306.1 mRNA upstream 104574 15733936 ~ 15755185 (+) True LOC122344749
XM_043238309.1 mRNA upstream 104574 15748967 ~ 15755185 (+) True trpv1
XM_043238307.1 mRNA upstream 126924 15728431 ~ 15732835 (+) True shpk
XM_043240590.1 mRNA downstream 951 15861054 ~ 15875316 (+) False rufy3
XM_043240591.1 mRNA downstream 953 15861056 ~ 15875316 (+) False rufy3
XM_043240595.1 mRNA downstream 954 15861057 ~ 15872935 (+) False rufy3
XM_043240592.1 mRNA downstream 4209 15864312 ~ 15875316 (+) False rufy3
XM_043240594.1 mRNA downstream 4216 15864319 ~ 15875316 (+) True rufy3
TU54012 other upstream 1139272 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1207848 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1554455 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1554455 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1567259 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 623899 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 623899 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 626517 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1504766 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2982716 18842819 ~ 18847674 (+) True arsk

Expression Profile