RNA id: TU54772



Basic Information


Item Value
RNA id TU54772
length 652
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G37123
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16053032 ~ 16054008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GACTCAGGGCAATCTGACGAATGTATATCATATTGAGATCCTCCAAAATACGAAGTTTTTCCTCCATGTCTGCGAGTCTGTCTATGGGCATCATTCAAGAGGGATATCGGCTCCCGGTTTAAAGTTCAGACTCCCACTTCTCTTCAAGCCGTTAATCTGTCTTGAGAGTTGAGAAACATTTTTGGAAGAAGCAAAGGACGGGTATGTATGAGTTACACGATCCAGACTTCAAAACGCATCCAAATCCGATCCGCGGCGTATCCAAGAAAATCAGTTTTCACGTCACAGACCAGCTCCATGTGTCCAGAAACAACAGTTCAGGAGAAGTCATGCGCATAACAACAAATACAACtaaagacaacaacaacaaaaaaacgcaAGACAGAGGAGTAAAACGCTCTTTTGTGAAACTCCTCAGAGCGTCCGCACGTCTACCTTTCTTCACAACAATAGCGACTGGATCCAGTAAATGAACGCTCTCTACTACGCGAAAAGCAAAACGGCTTTCCTAACACCCTCAAATCACGTTCTCCTTATCCCGTTCGTATAACCGGCCATTTACACGCGGTTTCCCTCTTTGTGTCCCCTCTGTACTgatgtgagtgtgtctgtgcgCTCTTAGGACTTTCCCACAAAAGGGCATCACAGGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54639 lncRNA upstream 133961 15918506 ~ 15919285 (+) True G37047
TU54628 lncRNA upstream 193143 15859759 ~ 15860103 (+) True G37038
TU54555 lncRNA upstream 229495 15821892 ~ 15823751 (+) True G36993
TU54610 lncRNA upstream 238181 15814853 ~ 15815065 (+) True G37024
TU54607 lncRNA upstream 239341 15813103 ~ 15813905 (+) False G37023
TU54816 lncRNA downstream 42088 16095985 ~ 16097005 (+) True G37155
TU54896 lncRNA downstream 337940 16391837 ~ 16395562 (+) False LOC122345998
TU54917 lncRNA downstream 420811 16474708 ~ 16485115 (+) False G37227
TU54978 lncRNA downstream 606624 16660521 ~ 16660743 (+) True G37260
TU55011 lncRNA downstream 733933 16787830 ~ 16812417 (+) True G37286
XM_043238845.1 mRNA upstream 38831 15985786 ~ 16014415 (+) False si:dkey-40c11.2
XM_043238843.1 mRNA upstream 38831 15985787 ~ 16014415 (+) True si:dkey-40c11.2
XM_043238844.1 mRNA upstream 38831 15985787 ~ 16014415 (+) False si:dkey-40c11.2
XM_043238861.1 mRNA upstream 74498 15951062 ~ 15978748 (+) True rhobtb4
XM_043240545.1 mRNA upstream 125877 15921761 ~ 15927369 (+) False wdr54
XM_043240808.1 mRNA downstream 22344 16076241 ~ 16083755 (+) True nos2a
XM_043240449.1 mRNA downstream 34044 16087941 ~ 16088913 (+) True LOC122345915
XM_043238291.1 mRNA downstream 90997 16144894 ~ 16251772 (+) True tmem8b
XM_043240348.1 mRNA downstream 325458 16379355 ~ 16389644 (+) True LOC122345865
XM_043240613.1 mRNA downstream 337900 16391797 ~ 16395298 (+) True LOC122345998
TU54012 other upstream 1332759 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1401335 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1747942 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1747942 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1760746 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 430105 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 430105 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 432723 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1310972 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2788922 18842819 ~ 18847674 (+) True arsk

Expression Profile