RNA id: XM_043240545.1


Basic Information

Item Value
RNA id XM_043240545.1
length 3408
RNA type mRNA
GC content 0.41
exon number 10
gene id wdr54
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15921758 ~ 15927369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATACTTCAGTTTGTAAAACGCTTGAGACACTCAGACCTTTGCGTCACTCCGTCCACCGCAGATTCTGTGACGTTCTACACACGTTTTCTCCGTCACTATGGATGCAAGAGACGCGAGACGGTGAAAGCTTGCTTACTACAATTAGCCTATATCCATAATACCAATTATCTGCCGTTGTTTGGTCTAATAACAGAAACGGCGTATGTCATCTTCATATTTGgagacatttatttcagtaacgTTATTTAGTCTGAAACGAAGAGGATTAACAGGAGAACCTATCAGCTGCTTTTATTCAGGAAACGCCGTCTCTAGTTGATAAAGTAAACAAGCGGCGCTCTTCTAAAAATGGCGAAAATGTACCACAAAGAGAAAAGCATTCAGATAAAGAGCAGCGCGTCGGCGCTCTACAACAACCTGAGCGTCCTGCGCATCGCGCCGCGGTGTCTCACCTATTTCACGGTGGTCCATGCAAACGTCGTAAACATGGTCAGCGCATCCTGGGACGGACTGAACTATTCCCACCGACAGCTGCAGTCTAAGGAGGGCAACGTGGCCACCAGCTCCTCGCTTATCATGCAGgcAGCCTGGTGTGTCCTGCCTTCAAGAGATCTCCTTGTTCTCACATCTCAGAAGGGGATCCAGATGTATGAATCAGATGGATCAATTATGGTCTATTGGCATGCACTGGACACACCAGAGACCCCTACTGCGAAGGCAGTGTTTGCACGAGGAATTGCAGCGGTGcgggaaaaatatatttgtgtggGGGTCTCATCTGGCTCAGTGCTAGTCTTTGACGTTCCCAATAAAGGCAGTAACATCACCCTGTCTGAGGTTTTGGAAGAACATAAAGAAGCAATCACAGACATGGCCTCTGAGTGCTCAGGCAGTCTGGAGTGCATTGCTGATTTAGTTAGTGCTGATGACTCTGGCCTCCTCTGTGTGTGGAAATCAGGAGAAGATTTTCAACTGCTCAACAAGATCCCTGGTTTTGACACGAGTTGTTCTTCGGTAAAACTCTGGAAGGGCACAGTCATCGCCGGCTATGGGACAGGACAGATTCGTCTGTATGAAGGGGTCACAGGTATACTGCATGCAGAGGTCAACGCTCATGCACGCTGGATCTACTCACTGGACATCGCTCCCTTCACTGGACTGCTGATCTCTGCAGCAGAAGACTCCTGGGTTAGAGTGTGGCATCTGAGCTTGACTCCAGAGACTAATAGCGTGGAGATTGAGCACATGTACAATGAGTGTGTGACTGATACACAGATCTGTGGAGCCAAGTTCTGTGACGGTGACGGCTACGCCTTTGCAGTGACCGGCTATGACTTGAGTGAGATCATCCGCTACACACAAGCCTAGTCAGGAATACAGCACGCACTTCTAAGACGTTCCCATCGGTCATAGGAGGATCGCCTGCAGAAGCGAGGTCATGTCTTGACAGTATAACGGTGAATATATTGCTGTACAGGTACGTGATAGGCAGGGCCAGGCTGGAGTGAGTGTTAGCCTAAAATCATCTTTTTAACATCTTAGGCACTAAAAAGCTACACTTGAACCAGATTACTGTGTTTAGCATGGTATGTCTACATGATTGCCGGTTGTGCTAAGTACAAAATACTCTTTGTGCTCTGATATTAACGTAAAATATGTAACACTGGTTAAACAGAACATGCAGATCTCAAAACAAGGGGTTGTACTTTTAGTGTTTTGCTTCACACGTAATGCATTTACTGAACAGTTTCTTTTACCTCATGAACAATTTTGGATGTGCAACTGAACCTGATGACATGTAATCATATTTGTGGTTCAAAATagtttgtaaaatgtatgaaatacaGGACTATTTTTTCCAAGCGGAATTATAATGTTCTTTATATTTGTCTAGAAACAAAAGCATTGTATCTATCTTGACGTGAAATcacgttttatattttgtgttgttgtcatagttttttttttgttgctattttctgtttctttgtaaaCAATTGTCAGTGAgaattcagcaaaaaaaagaaaaacacaaacaaacaaaaatacttgTTTATTGTGACTTTTATTGCAATTAGAAATGTGTGGCAGTAGATGGCAGTAGATCTTAtactttttctgaaacattttaaacgTTTGTAACTTTTAAGATCTGAATAAGCATATTTAATTCAAGCACAAGTCTGTTAAAGTGTACTCATTCATATAAAACATCTATGAAACATATCACAGAACATATTAGAACACAGTCAGCACTCATTtctattcaaaatgaaaaaatgcttaAGAGAATGTTTAAGCTGCCTAAATTGACCAGACGTTGTTTTCCTACTGACACGATGTCTTCTTTCCTAATGcattatatgtacatttatttgcattgtatttACAGTTCTTTGTAGATTCTGGACGCAAGTTACATTACCTTCAGCAAGGATAAAGGGAAAGTAAAAACcaagatattttaggcaatttagAACATACCAGGACACTATTAGGAAAAAGGGTGACCGCTATTATGGCCACCGTTTATTAAGGCATGAAGtgaatagaaaataatttaaatcagcTGCAAGACAAAAGTTTCTTTCTAGAGTAAAATTGTAAATTAGCAGCATTTTCATCCATGACTgtagttaaaaatgtatcacCATTAACATTTGTCCCTTTGTTTTAAGCTATAAAAGAGGGCATTGATTGTCAGATGTGTCCTTCGTGCACCTCATTTACGCTGTTTTCAGACTGTAATGTTTTGTTGCCATTTCATCTTTCATCTGTGCAGCTTTCTGTTTTTATAGGTCAAAGCAGAACACTAGAGATATGCAGATAAAATATCTACAATGCTCATTTGACCGTATTTTACCCATAATATTTATGTCCATGATTCTGTTGTTCCATCATAGCATTATCCACACATGACCTCTCTTTCCAGCTTGTTGCTGATAAAACCCCTTGGTCTCTTATGTAAGACTTTTAACTTTGTCCTATGGATGACACTGTGTGTGCCCTATATCTGTTATGAAGAGAGGGTGAATATCAATGTCACAGAGCGACAGATCTAATGGGTAGAGAATAGACTGCTGACCATCAAATTTGATGGTGTAGAGAAAGGGTCCAGAGAGCGTCAATGAGACCTCCACTGGCTGTGGGTTTAATGGAATTATGTAATGCTGCATGCAGCACTGGAGCACAGTGAGATGCGTTTAAGGTCATTGTGTTTAGTGGGATCTGTGGTAATAAAAACTATGGCTGGTCTACAGGCCATGTAAAATTCAATAGTGCTCTCCAGACACATCAGATCTGCTGGCTCCGGGATGGGGGTTTGGCGTTATGCAGTTTCAGAGAACACAAGATGCTTGTTTAATAAACTTAAGCCGACGTAAAATAAAGTCTGTATTTTCATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54639 lncRNA upstream 2476 15918506 ~ 15919285 (+) True G37047
TU54628 lncRNA upstream 61658 15859759 ~ 15860103 (+) True G37038
TU54555 lncRNA upstream 98010 15821892 ~ 15823751 (+) True G36993
TU54610 lncRNA upstream 106696 15814853 ~ 15815065 (+) True G37024
TU54607 lncRNA upstream 107856 15813103 ~ 15813905 (+) False G37023
TU54775 lncRNA downstream 125663 16053032 ~ 16053819 (+) True G37123
TU54772 lncRNA downstream 125877 16053246 ~ 16053897 (+) False G37123
TU54773 lncRNA downstream 125877 16053246 ~ 16053819 (+) False G37123
TU54774 lncRNA downstream 125877 16053246 ~ 16054008 (+) False G37123
TU54816 lncRNA downstream 168616 16095985 ~ 16097005 (+) True G37155
XM_043240422.1 mRNA upstream 10883 15906315 ~ 15910878 (+) True aqp3a
XM_043240600.1 mRNA upstream 36657 15878865 ~ 15885104 (+) False mob1ba
XM_043240599.1 mRNA upstream 36657 15878867 ~ 15885104 (+) False mob1ba
XM_043240601.1 mRNA upstream 36657 15879106 ~ 15885104 (+) True mob1ba
XM_043240597.1 mRNA upstream 48826 15864344 ~ 15872935 (+) False rufy3
XM_043238861.1 mRNA downstream 23693 15951062 ~ 15978748 (+) True rhobtb4
XM_043238845.1 mRNA downstream 58417 15985786 ~ 16014415 (+) False si:dkey-40c11.2
XM_043238843.1 mRNA downstream 58418 15985787 ~ 16014415 (+) True si:dkey-40c11.2
XM_043238844.1 mRNA downstream 58418 15985787 ~ 16014415 (+) False si:dkey-40c11.2
XM_043240808.1 mRNA downstream 148872 16076241 ~ 16083755 (+) True nos2a
TU54012 other upstream 1201274 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1269850 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1616457 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1616457 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1629261 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 556633 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 556633 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 559251 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1437500 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2915450 18842819 ~ 18847674 (+) True arsk

Expression Profile