RNA id: TU93570


Basic Information

Item Value
RNA id TU93570
length 206
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G63195
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12055042 ~ 12055247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttactCCATTATCAAAAAGTAATAGTTCTTCACACCTTCATCATCCAATATCCTCTATGCATGCGGTTTCATGCACAGCTTGTTAaagtcatttcagtttttttttccggTCCCTCATCGACTTCTCCGCTAGGCACTTGTTCATTTTACAGGAGTCCACGAGCCATAATTAACACCTTCTCATTTGAATCATTAGGATTCATC

Function

GO:

id name namespace
GO:0051147 regulation of muscle cell differentiation biological_process
GO:0051149 positive regulation of muscle cell differentiation biological_process
GO:0051153 regulation of striated muscle cell differentiation biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0045597 positive regulation of cell differentiation biological_process

KEGG:

id description
ko05418 Fluid shear stress and atherosclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251586.1 lncRNA upstream 690 12052582 ~ 12054352 (+) True LOC122350249
TU93560 lncRNA upstream 37690 12016726 ~ 12017352 (+) True G63188
XR_006251587.1 lncRNA upstream 55748 11987331 ~ 11999294 (+) True LOC122350250
TU93533 lncRNA upstream 199422 11855386 ~ 11855620 (+) True G63173
TU93510 lncRNA upstream 257071 11770781 ~ 11797971 (+) True G63158
TU93587 lncRNA downstream 76650 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA downstream 79650 12134897 ~ 12139410 (+) False G63207
TU93586 lncRNA downstream 79650 12134897 ~ 12139410 (+) False G63207
TU93579 lncRNA downstream 124940 12180187 ~ 12189479 (+) True G63204
TU93608 lncRNA downstream 185394 12240641 ~ 12326938 (+) False G63218
XM_043246556.1 mRNA upstream 4074 12047515 ~ 12050968 (+) False LOC122350223
XM_043246554.1 mRNA upstream 4074 12047517 ~ 12050968 (+) False LOC122350223
XM_043246397.1 mRNA upstream 9472 12031565 ~ 12045570 (+) True LOC122350149
XM_043246586.1 mRNA downstream 2410 12057657 ~ 12060195 (+) True lamtor5
XM_043246466.1 mRNA downstream 6380 12061627 ~ 12074306 (+) True slc16a4
XM_043246444.1 mRNA downstream 60657 12115904 ~ 12134729 (+) True slc6a17
XM_043246543.1 mRNA downstream 142021 12197268 ~ 12199793 (+) True ngrn
XM_043246542.1 mRNA downstream 142189 12197436 ~ 12199793 (+) False ngrn
XR_006251578.1 other upstream 4074 12047509 ~ 12050968 (+) True LOC122350223
XR_006251576.1 other upstream 198350 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 213587 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 234559 11817057 ~ 11820483 (+) False fance
unassigned_transcript_1296 other upstream 257382 11797588 ~ 11797660 (+) True trnar-acg_41
TU93573 other downstream 2435 12057682 ~ 12060197 (+) False lamtor5
TU93955 other downstream 435013 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 435013 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 435013 12490260 ~ 12491924 (+) False G63453
TU94067 other downstream 582983 12638230 ~ 12638565 (+) True G63533

Expression Profile