RNA id: XR_006251587.1


Basic Information

Item Value
RNA id XR_006251587.1
length 2207
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122350250
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11987331 ~ 11999294 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTTTTCGAGACTATTACAACACTTCATCTCAGAGATTCATATAATTCGTGGTTGGGGGTCTATGAGTGGGCTGTACAAAGAGGCAGCGGGAAAGAGAGTGAGCGGTGCTATAGGTCATCATGCAGAGCTTCCTTATCATGCGCCATTCAACAAGCAAGATTGTTGCCTTAAGTTTGTGAAATAGATCCGAGAGATCACAAGGATTGAGCTTCACTCTGAGGATGGATTGTACTTTtgaagagagagaggtgtggataaaaatgtgtttctgctTGTGGCTGAAGGTGAATTGATCTAAAATATGCAGCGGCCTCTCCATGGCTCTGGGGACTAAGGAAGCTGTTGAAAGCTTTGAAGCATTATCGGAATCCAACTTGATGGTGCAGCTCACACCCTACTTTGACAGGACAACACTGCAGGGCTACTACCTGCCTGTCGGTCCAATTACATGTCAGCAACACCGCAGAAGAGTGATCCAGTGCTTTAAAACGCTAGATTTGCCGGCAGCCAAAGGAAAACCAGAGTGAAGGAACAGCAGGTAAACTACTGCACACAGTTGGGAAGCTAAAAGATGCCCTAAGTGAAACAGTTTGACAGACACACGCTTAAAATGGACACAGAGAATGAATACAATGGGAAAGTGTCTTTCCCAGGAGATGAATTGGAAAGGAAGGTACAGCAGTGGGAAAGTAAACACCAAGGTCAAGGTCTTCATTTAATCCTTTGGGGCAACGACTTATTCAGGGTTGTGCAATATTGCAAAGCAAGGGCAGAGAACTGCACACATGCCTTCATGAATACCAAGTACATCCCAAGCACCTTTTGTCATATTGCTATCAagctatctttttttttcacctatATGGATAAGATGCATTTAATGATAATAAGATTGGTGTTAGAAATGGCATTCCTTTATAGTCTCGTTTTGGCCAAATGTAAATAGATTCTTCTTttgtttaaactaatatttgCACAAACAGCAACTAGAACTCTGGAATTCTGTTTCCATACCCACTGACCTTTCCAGGATCTCAGTTATCTGAAAATTATAAATCAGTATTCAGGTTTGGGCCTGAGACCGCAGCCTGATCTTGAGACGGGAACAGCAATCTGTGATTCTGATATGAAGCTGATATATTTGCAGGACCAACAATGACAAAAGCTTATTTCCACAAATCAGAGGCAAGAAATGCATGAAAGATCGTGGATGCCAGGCTGATGTGAATCAGACTGAACTGCAGATAGTGTAGTTTACCCTTTTTGGTTAGCCAGAGATCCTGTTGAAATGACCAGCTAACATTTTGCAGAAGTTGTAAGCTAACAATGGCATTTGTAGAGTCATTTCAGTTTGTGAATATTTAATCAGAGCAAATTTGATGAACttgttttttgtcttaaaaGCTTGTTGGCTGTTTGTCCTCTGTTTTGTCCACCCTATTTCCCAGCACACAGTAGAGCCTTTTGATTGGAGGATAAGAGTAAATGGGCAATCAGTGcaagaaaaaatgaaagcatgGGAGGATACTCTTTCAGATGATGGAATCGCTGTAATTTTTAGACAATACATGTACagaaaaaatgctaaaagttcaaggttattatatattatgctaattatattatattatactataatgtattaataattacttgacaatgtgcaattatttacaatattgtgtggcacagacacacactagCTGTGACTGTATATTTGCTATAATAAACATGAACAGATGTTTTATGGTTTCATGATGTATTGTTTACATTCAAGTACAGTCTAACCTTGAATAAAGTCCTCATAAACATGCAGAAGGAAGTGAGCAGCTGAGATTATGTAAGATACGGGTCTGGAGCTTTTCTCTCATGTTGAAAAATTTAACAGCCATCTGTGAATGTCCCAGGTCAGTGCAGGAGAAAACAGGCCATTTCTGAGAGGTTCTATAGGATGTAACATTACAGCCTTTTACCTGCTGTGGGCTAGTCAGTTTCAGAGGCATCAGGATGTTTTAAGAGCACTTAATGAAATGGTCAATCAGGTCATGCTCATGCTCTTGACCTCCAGTAATCAGAACCACCACAGCATTTAAAGGGCCAGTGAACACTCAGCCGCTGCTACTTTAACCACCTGACTCTAGGCTATTTCCCTTATGTTTGTCATCTTGTGACCAGATTTGACAGCATAAAGCCTGATTAGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93533 lncRNA upstream 131711 11855386 ~ 11855620 (+) True G63173
TU93510 lncRNA upstream 189360 11770781 ~ 11797971 (+) True G63158
XR_006251588.1 lncRNA upstream 234746 11751164 ~ 11752585 (+) False LOC122350251
TU93493 lncRNA upstream 235284 11749560 ~ 11752047 (+) True LOC122350251
XR_006251585.1 lncRNA upstream 367164 11615467 ~ 11620167 (+) True LOC122350248
TU93560 lncRNA downstream 17432 12016726 ~ 12017352 (+) True G63188
XR_006251586.1 lncRNA downstream 53288 12052582 ~ 12054352 (+) True LOC122350249
TU93570 lncRNA downstream 55748 12055042 ~ 12055247 (+) True G63195
TU93587 lncRNA downstream 132603 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA downstream 135603 12134897 ~ 12139410 (+) False G63207
XM_043246463.1 mRNA upstream 24277 11900545 ~ 11963054 (+) True cpne5a
XM_043246464.1 mRNA upstream 24277 11900545 ~ 11963054 (+) False cpne5a
XM_043246453.1 mRNA upstream 105188 11869607 ~ 11882143 (+) True srpk1a
XM_043246452.1 mRNA upstream 105188 11869607 ~ 11882143 (+) False srpk1a
XM_043246537.1 mRNA upstream 118101 11857546 ~ 11869230 (+) True mapk14a
XM_043246447.1 mRNA downstream 27048 12026342 ~ 12031224 (+) True mmp9
XM_043246401.1 mRNA downstream 32270 12031564 ~ 12045570 (+) False LOC122350149
XM_043246397.1 mRNA downstream 32271 12031565 ~ 12045570 (+) True LOC122350149
XM_043246400.1 mRNA downstream 32271 12031565 ~ 12045570 (+) False LOC122350149
XM_043246398.1 mRNA downstream 33213 12032507 ~ 12045570 (+) False LOC122350149
XR_006251576.1 other upstream 130639 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 145876 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 166848 11817057 ~ 11820483 (+) False fance
unassigned_transcript_1296 other upstream 189671 11797588 ~ 11797660 (+) True trnar-acg_41
unassigned_transcript_1294 other upstream 198907 11788353 ~ 11788424 (+) True trnah-gug_22
XR_006251578.1 other downstream 48215 12047509 ~ 12050968 (+) True LOC122350223
TU93573 other downstream 58388 12057682 ~ 12060197 (+) False lamtor5
TU93955 other downstream 490966 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 490966 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 490966 12490260 ~ 12491924 (+) False G63453

Expression Profile