RNA id: XM_043246464.1


Basic Information

Item Value
RNA id XM_043246464.1
length 4956
RNA type mRNA
GC content 0.43
exon number 20
gene id cpne5a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11900545 ~ 11963054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGCGCAGACACCGAGACCTCGCCGCTGTCAGAAGAGGCGCGCGCTTGCACTCTTCCTTGAGTTTTTCATTCAGCAGAGCAAACCCTTTACGcagtcttctttttttctttcttgtaaCATTGCCGGTTTCTTCATTTGAGCGCGTCACTGGACGTCCGCGGTGTCCAGCGCGCCTCCAGCACAGACGCTGATTCTCTGTCGCCCTGCTGCGGTCCTCGCCGGAAGCTGTGAGATTTTAGCGAGCACCGCAGGACCCAGACCCGCAAAACTGTTTGAAGTAGAGGGCTTCCTCTTGTCCCGCGCGCCCATGGAAGGCGACGTTATGGATAAACTGGAGGACATGGCCTCGGTGTGCGAGTTCGACCCTATCACGGGGGATATTCCCGCCACCAAAGTGGAGATCACCGTCTCGTGCAGAAACCTGTTAGATCGGGACACGTTCTCCAAGTCAGATCCTTTGTGTGTTCTCTACACTCAGGGAGTGGAGTCTAAGCAGTGGCGTGAGTTTGGGAGAACTGAAGTCATCGACAACACCCTGAACCCAGACTTTGTGAGAAAGTACATCCTGGACTATTTCTTCGAGGAGAAGCAGAATCTGCGCTTTGACATATATGACATTGACTCCAAAAGTCCTGATCTGGCCAAACACGACTTCCTTGGTCAGACCTTCTGCACTCTGGGTGAGATAGTGGGTTCACCAGGCAGTCGTCTGGAAAAACCTCTGGGtggcatCCCTGGGAAGAATTGTGGTACCATTATTCTCACCGCAGAGGAACTTGGAAACTGTCGGGACTGTGCAACAATGCAGTTCTGTGCCAATAAGCTGGATAAGAAAGACTTCTTTGGCCGCTCTGACCCGTTCATGGTGTTCTACAGAAGTAATGAGGACGGAACgtTCACTATCTGCCATAAAACTGAAGTGGTAAAGAATACATTGAACCCTGTCTGGCAGCCGTTCACCATTCCTGTGAGAGCGCTGTGCAATGGAGATTATGACAGATCAATTAAAGTGGAGGTGTATGACTGGGACAGAGATGGCAGTCATGATTTTATCGGGGAGTTCACCACCAGCTTCAGAGAGCTCTCTCGCGGTCAGAGTCAGTTCAACGTGTACGAGGTGGTAAATCCTAAAAAGAAACTCAAAAAGAGGAGATACATGAACTCTGGCACAGTGACACTGCTTTCGTTCTCGGTGGAGGCCGAACACACGTTCCTGGACTACATCAAAGCAGGcacTCAGATCCATTTCACAGTGGCCATTGATTTCACTGCATCCAATGGGAACCCTTCTCAGTCTACCTCCCTGCATTACATGAACCCCTATCAGATGAACGCGTATGCCATGGCGTTGAAGGCCGTGGGTGAGATCATTCAGGATTATGACAGCGATAAGATGTTCCCAGCGTTGGGCTTCGGAGCCAAACTTCCTCCTGATGGCCGGGTTTCCCATGAATTTCCCCTGaatgGGAATGTAGATAACCCATACTGCAACGGGATGGAGGGCATCCTTGAGGCTTACCACGAGAGTCTGAAGACTGTCCAGCTTTACGGACCCACCAATTTTGCTCCTGTCATCAACCATGTAGCAAGgtaTGCTGCATCAGTTCAAGACGGCTCGCAGTACTTTGTGCTTCTCATCATCACAGACGGTGTGATATCAGATATGGCTCAGACTAAAGAAGCCATCGTCAATgCAGCAAAACTACCCATGTCCATCATTATTGTTGGAGTTGGCCAGGCTGAGTTTGATGCCATGGTTGAACTGGATGGCGACGATGTGAGAATATCCTCCAGAGGAAAGCTGGCAGAGAGGGATATTGTACAGTTTGTACCTTTCAGAGACTACATGGATAGGACGGGAAACCATGTCCTGAGCATGGCACGGCTTGCCAAGGATGTCCTGGCAGAGATCCCGGATcagttaattttatatatgaagTCAAGGGGCATCAAGCCCAACCAGACGCCACCAGACTACAGCCCACCTGGGCTCAGCCCAACCCCCACCGTATGAGTTTCCCCAGCCTGCCGAAAGAAAACAGGCCATGTTATGTCACCTCCAATTTGGATCTCGTTCAAAGCCAATACAACTGAATCAGTGTGAGGCGTCTGGGAGAGCGGATGCTTTCAATTCCCGGTTTTTGGATCTCATACACTGGAGAAATTGAAAATTCTATCTGTGTTCTGGAGTTTGAACTGAAAAGAACTGTACTTATTGGTCTGTGAGTTGGTTTCCTCCTCATAATTTCTCAAATTAGCCAACATTTATAGTTTGGATCGGTCTCATCCAGATTCATACCTCCGACTTTGCTGGATGTATCTGGCAAGAAGATCTGGCAAGCAATgcaattttctgcttatttaaCATCTCTAACATCTCAACATCTATAAAAACGCTATAGCTCTTGTGTGTCAGCATGTGAGGACTGTGTGTTATATTAGGAAAATTGTCCTTGTATCTGCCAGAGGCAAACAAGAGCATCACTAGAAAGTGTGGttttaaaaatagtgaaattATAAGTGGTTGTTTGACCTATTATACCCTTTAGAGGGGAAATGTTTAGTGAACTTGTTTGATTCGTTTATAGAATTTGTAGATAGTTTGTGTTATGgtggttttatttttcccatGGGGTTTGGGCAAAGTCTTTTTAGTACAAAGTTATATTTCCCATTGCAGTTTCCCATTTATAGCTTTTTAGAGCTATGATAAACAAGATTTTCTATTCAAAAGCATGAAATCCAGGTAAAACCAACTGTACATTGCATTAATacattgtattaaatgtatttactttagATGAAATCGGTTAAGAAAAATCCAATGTAAAAGTCTAAGAGAAGcacaaatattttcttaaagcTGTAAAATTTGTAAATGTTAATGAGAGGTCTCAGATTCATTACATTGCACACAGAAATAACAGGAACAATCAGctcacaacaaaacaaaatttactttaatttgccCCTCCAATTCCCTCCGATGCTCTGGAGCCGGTATCTTGATATCATACAGCAGCTCCTCAGACGCACGCGAGCCTTCGGAGGAAACACGAGAGATGTCTCGCCGCTTGCTCGCTGCTAAAGATGATTGGAGATGAGGCAGCGTCTGCTGTCAGTGTCCTGCCACGCTCAACCTTCGCCCTCTCATTCCTGGGATTTTCCCTGGAgtttaaaacacttttctattcttcaccatgacaggaATTAGTTCACTGGTTTCAAAAGATGAAAGACACATTGCATGCAGCATTACTCACAGAGCAAACATAATGCcattttgtttcagtgttttagcTTTAAATGATTCATAGCATTGGCATAATAACAGGACAAGCATCGAACGCGATTAATTTCATAAACTTGCCTTACATGCAGTAGGTTTACATTAATGGCTGACAGCAAGCATAAATTAGAAACCGAATTTTATATGCAGTATTATCACTGAGGAAGCGCATGTTGATTTccttttcaattttaaaatcttaataggCTTAAGACATTCAGTTAAATCTCGTAAAATGTTAAGATTTGCTCTTGGTTAGCATACGCAGCCTTGTATACAGCCTCTTTTGTCTGAGGTccattttgaaaattaataatCACTATCACAGACAAACCTGTATGTATCAGTAAATACTGACTGACTTGCTTTTTTGGACAGCAGGGCCGTTTCTACTTGTTCTTACCCGCagttttgatacattttctCCTTGTCTGGTAAATTTTGACATCTTTGCTTGTTTATCCTAAGTTGTACCAGTGTTTTGGTTTCAGAACAATTATCTGTTATTATAGTGTAGATTATGAACTGTGAAGATgactgcagttttattttaaaatcacagttgGTCCTGAAGCTACAACTTCGTCAGCGctaatgtttacaaaatgtgATTTCCCTCTTTTTAACAACAAGAATGACAATGTTCTTTCGCAAAGATCGTTAAATTTGGAAAATCTGCTCCTGGATAACAAGACAATGTGCTTAAACGCATCTTTCTTTTGCTCTGAGTTATTAGCACACCTGGTGTTACTGAGAATGAAGTGATCCATCAATCAATTAGGAGGTGAAGATTAAGTCTGACAAAGGGAGCATTGGGTGAAAGAGTTTATTTGAGAGTGTTAACAGGTGTATTGATCTTAAAGGCGTATTTACTCTTCACTTGATAATGTTAATGACTAGTAAATATCTAGAAGGTAATAGTCATTTAGCTGTCGAGAAGAAcgttattttttatgtttcttcattatattttgttttgttgcgctttttttcttttcaatggCCTTTCTATTATATtctgtttttcaaatgtaaaccTGAAATTTCTACTTGCATAAATGTAACCTTTTTTAAAtcctgtttaatatttatgaacgCATTGCTGCTAGGTGGCTTGTAAATCCGAAGAACGAATTACAGGCGTCCTGAAACACATGTATATCACTATCCAGAGAACGTTACTGGGTTAATTTTATGGCATGGTGTAAAtttaacaaatacagtttttttttaatcccacTATAGTAAGTAAAGCCAGTCGTATAGCAGTTCATAAAACCATTGCAAAGAGGTGATAGTAAGAAAAAGGTGTAAATTATGTGTTAAAGATGTGGCCCTTGTCCAGTGCCGGCGTTCCCTCTGTGAGATATGCATGATTGTGCCAAAATGGCCGTTGGGTTCGGTGACGATGTCCTACTGCTCTGCGTTAAGCCTCTGCCTCTCTGCGTCTCATAACCGAAGTCCAGAGCATGACGCATCCCATTCTTGCTATATtccttttccttctctctttttcctgtTCTTTGCCTCTCTTTATCTCAGTCGATATGCATGGTGAGCTATTTCCGAACCGAACATAGAACATTGCTGTTGTCATTCCCGTGGTGTGTGAAATTTGTAATGGATTGccttaaaaatgacaatgaataaaacaatgacAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93533 lncRNA upstream 44925 11855386 ~ 11855620 (+) True G63173
TU93510 lncRNA upstream 102574 11770781 ~ 11797971 (+) True G63158
XR_006251588.1 lncRNA upstream 147960 11751164 ~ 11752585 (+) False LOC122350251
TU93493 lncRNA upstream 148498 11749560 ~ 11752047 (+) True LOC122350251
TU93416 lncRNA upstream 281315 11619019 ~ 11619230 (+) True G63094
XR_006251587.1 lncRNA downstream 24277 11987331 ~ 11999294 (+) True LOC122350250
TU93560 lncRNA downstream 53672 12016726 ~ 12017352 (+) True G63188
XR_006251586.1 lncRNA downstream 89528 12052582 ~ 12054352 (+) True LOC122350249
TU93570 lncRNA downstream 91988 12055042 ~ 12055247 (+) True G63195
TU93587 lncRNA downstream 168843 12131897 ~ 12139410 (+) True G63207
XM_043246453.1 mRNA upstream 18402 11869607 ~ 11882143 (+) True srpk1a
XM_043246452.1 mRNA upstream 18402 11869607 ~ 11882143 (+) False srpk1a
XM_043246537.1 mRNA upstream 31315 11857546 ~ 11869230 (+) True mapk14a
XM_043246536.1 mRNA upstream 31315 11857547 ~ 11869230 (+) False mapk14a
XM_043246538.1 mRNA upstream 34040 11857544 ~ 11866505 (+) False mapk14a
XM_043246447.1 mRNA downstream 63288 12026342 ~ 12031224 (+) True mmp9
XM_043246401.1 mRNA downstream 68510 12031564 ~ 12045570 (+) False LOC122350149
XM_043246397.1 mRNA downstream 68511 12031565 ~ 12045570 (+) True LOC122350149
XM_043246400.1 mRNA downstream 68511 12031565 ~ 12045570 (+) False LOC122350149
XM_043246398.1 mRNA downstream 69453 12032507 ~ 12045570 (+) False LOC122350149
XR_006251576.1 other upstream 43853 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 59090 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 80062 11817057 ~ 11820483 (+) False fance
unassigned_transcript_1296 other upstream 102885 11797588 ~ 11797660 (+) True trnar-acg_41
unassigned_transcript_1294 other upstream 112121 11788353 ~ 11788424 (+) True trnah-gug_22
XR_006251578.1 other downstream 84455 12047509 ~ 12050968 (+) True LOC122350223
TU93573 other downstream 94628 12057682 ~ 12060197 (+) False lamtor5
TU93955 other downstream 527206 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 527206 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 527206 12490260 ~ 12491924 (+) False G63453

Expression Profile