RNA id: XM_043246400.1


Basic Information

Item Value
RNA id XM_043246400.1
length 5890
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC122350149
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12031564 ~ 12045570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcCACTAGTGCCTAAGAGGAAAGTAATAAGCATATTATTTTAGGTGGACTTCTGACATTTGATCATAAAATGATATTGGGAAAGTGACACAAAGACACATTCGACTGTCACTATATGACTATCATATTTTAACGCTGCTATAAATGATTTTCCGACTCACCGCAAGAGAAAATGCTAAAACAAGTGAAAACGCTGgactatttttacaaataaaacagttaaaagtaactaaaaataTGAATCTAGGTTTACGAGGAATGACAGGAAATGCAGTAGGAAAATGTCTCGTTTATATCAACAGAACATATTTAACAGAATGTAAACTGACTCGTGCGTAATCCCTCACATTTAAAATGggcaataaaattgttttatgttggcttatcaaaaaatgtaaaagaaaatcttaaaaataaacaaccgGTGTCATATTAATCCGCGAGAAACTCGGTGGTTTCATCCTCTGAGAGCAATTAGTCCTCCGGTTCACAGCATTATttgacaaacacatttaaaagaagaCGCGAAATGTTCGATATTTATGTTCTCTAAATAGAGCGTCACTTTTGAAATAAATCGTGATGCGTTATAAAACAGATTAAGGATCTTTGCCTCTCGTCTTTCCCACTGACGGATAAATGAGTTCCGGCCAGCTCTGAGGACAGGAAGCGAGGAGACGCTGATGGCGCCCGACTAGAAACCATTACGAACTATTCGCTTTCAAAGATCTATTTTATTTCGCCGCATTCACGAGCGTGAAGAACAAAATACTGGTCCACTTAAGAGCCGAGATGGACTCTGAGGAGATGGAGGTGGAGAGCAGCAGTGATGTGGGGCATTCTGGGATGGAGGAGCCATCAGAGAGCGGCATGGGCATGGAGTCTTCGGAGGCCATGTCTGCTGACAGCAGCGACGCTGTGGCTCCACCTGCCCCGGCCCCAGAATCAGACTGCCACGTAGGACAGAGCTCTGAGGGACTTGTGGTTTTTATCCCCGAGACCAGCTCCAGCACAGATGTGCGAAGAGTTCATCTCCCAGACTCCTCTTCTGTCGCACAGTCAACCAGTGTGTCCAGCGTCTCCACAGTGACACAGTCAGTCCTGGTGTCAGAGTCTGTCCAGGTCCTGGTCCACTCCAGCGCTGTTTCCGAAGGAGGAATGATGGTTTCTGATTCCACTGCTTCCACATCCTCAGATCTCGGCTCAGCTATTGACAAGATCATTGAATCCACCATTGGACCTGACATTATGAATGGATGCATTGCAGTTACGAGTGCAGAGGATGGCAGTGCAGAGACCACACAGTATCTGATACTTCAAGGTCCTGATGATGGAGCTCCTATGGTGGCTCAGATGTCTTCCTCTGCTCTGTCAAGCCGCATTGCCATTGAAGCCCTTGCCGACGGACCTACCTCCACTTGCCTGGACCAGGCAGACCTGTCAGAAAATCCACAGGGCAGCGTGGAACCCGACCAGCCTGGACACTCAGGATACCGTGAGCACGACGATGTCCGCCCGGACCAGCCGCAGCACTCCCAGTACATAGAGTGCAGTGGAGGAGACGACCCAGACCAGACCAGAGAAGCCCGGTACATCGAGTGCTCAGGAGCTGAACCTGACCAGACCCCACGTCATTCTGGGGTCACCAACTACAACGTGGCAGACTCCGAAGAACCTCTAGGGCGTTACGCGGCAGAGTGCAGCGGAACAAACAGTAGCCCTCAGAGACACTCATTTCGCTCCTCCCGATATATTGTAGAGTGCAGCGATGGCTACTTAGACTATGGCCCTGAGGGCGCTGAGCAGCCACAACATTCACGTTATATAGACAGCAGCATGGATGACAGGGAGCACGTTTCGGCATCAGAGCAGGAAGGAAGTGTGGTAGAAGTTCCCCAACACTCCTTCTTACCAGAGGGCTCGCTATATGCTGACGAGGGGGCCGTTCAACACTCACTGGCTGACACAGTGGGATCCCAGCTCACTGAACAAATGGACTGCAACGATAACCTGACTGGCCCGTACATAAGTAGCAGTGGGACATATTCCACCCACCCAGAGCCTGAAGTGGTGGAGTCTGGGGTGGTGGATGAGCCTGGGCACAGAACCCCAGATATGGCTGAACTAGAGGAAATGATGGAGGTGGTGATTGTACAGCAGTTTAAGTGTAAAATGTGTCCATATAAAAGTGTCTCCAAGGATACGCTCATCAACCACATGAGAGACAAGCACTTTAAACCACCAGTTGGTCCGGGCCAAAAGAAACGTGGACGGGGACGCCCTCGCAAATCTGAAAGCAGGGCGCGAGCAGTCGCTGAGGTCAAGAAGGAGGAGCCAccagaagaggaagaagatgacATCATTGACGCAGGTGCTCTTGATGATCAAGgtGACAGTGATTATAAGCCATCTGATGAAGCGGCCAGGTCCAGATTGGCTTCTAGTCACAGCACTCCTCCTCCTTCCtgctcttcatcatcatcctctACCTCACGGAAACGGCCCCGCAGGGCGGTGGGGCCACCCCGCAAATTCCTTCCTTACTCAGAGTCAACAGTGGCAAATCAAACAAGCAATGCAGGGGACCCTCAAGCTCCTGAAGAAGCAAGTTCCTCTGGATTGGAGAATGGATCTTCCTCACTATCCAGCGGGTCAGCAGTGGAACCAGCCGTCAGCCAGTCCGATCCAGAAAACAAAGATCCCTCATCGAACACAGGACCTGACGACCTGGAGTTTTTGCCCCAAAAAAGAGGCAGGCCTTCTAAACAATTCCTTCAAAACAAGTACAAAAAGTACATGAATCGCAAcaaGTACTACAGATCCCTTAAGCCTTTGCTAAGACCTCATAATTGCTGGATATGTGGCTCTCGCTTTCTGTCGCAAGAGGATCTTCAATTCCATGTGGATTCTCATGAAGGAAATGACCCTGAACGCTTCAAGTGCCTGCAGTGCAGCTACCGCTGTAAACGCTGGTCCTCACTAAAGGATCACATGTTCAATCATGAAGGTATAAAACCATATAAATGTGAGGTGTGTGATTACTCCAGTGTTTATAAAAAAGACGTGATCCGACACTCAGCTGTCCACAACAAAAGCAAGAGTCGTAAGACCGATATGGTTCCCAAAGTGTCCGAGTTTCCGTGCCCCATCTGCTGTCGCGTATATCCCATGCAGAAACGCCTGACGCAGCACATGAAGACGCACAGCACAGAGAAACCTCACATGTGTGACAAGTGTGGGAAATCCTTCAAGAAGCGCTACACTTTCAAAATGCATCTTCTCACACACATCCAAAACTGTGGCAACAGCACGTTTAAATGTGAGTTTTGTGAGTATACCTGCAATGACAAGAAGCACCTGCTTAATCACCAGCTGTCCCACACCAATGACAAACCGTTCAAATGCGAAGAGTGCAAATACTCCACGAGTAAAGAGGATTTCCTGGTGTCCCACATTGCCATTAAACACACTGGTGAAAAGCCCTTCTCATGCGACATGTGCCACTTCACGACAAGACACAGGAAGAACCTGCGCCTGCATGTGCAGTGTCGCCACCCCGAGGCCTTCGATGAGTGGAGCCGATCCCACCCAGAGGAGCCAGTTCGCCGGCGCCAGACGTCAGTTTTCACTGTGCAGCAGATTGAGGAACTGAAATTACAGCATGAAACCCAGGAATTTCAAGGGACCATTGTAACAGTGGATCCCATTACTCTCCAAACCATGGAGTCCATAGGGAAAACATCAGTATCTCAAGATGCACTGGGCAACACTACAATCATTTATGAGCAAGCCCAGACTACAGACCTTTCAGCCCAAAATGCTCTAGATCTGCTGCTGAACATGAGTAATGCCAGAGAACTGCAGGTGGCAGTGTTGAAACCAGATGGTAAGACCTTGGAGACGGGGTCGTGGACTGGAGCTGACTCTGGGAGTGAGGGCTCATCCTTGCAGCCTCAGAAGATTGTCACATTTCATGTGTCAGAGAATGGGGACACTCTGGTGCAGGAGGCGTTTGAGACAGCTACGGGGACCGTGGAGCAAGAGGAGACAACGGATGTGTCACAAGAGGTGACACAGATAGGCATTGGTACATACGAGGGAGCAGATTTCAGTGTGGTGGAGCAGGCCTCCGAAGAGACAGCAGACAGCAGTTTGGCGGAGCCTCAGGTCATGGAAGTGAGCACAGAGCCCTTGTCCATCTCTACACCTCTCAAAgagaataaagaaaagttttatttgAGCTCAGGCTTGACAGACGGGGTCCTGCAGCAGGTAGAGCTAAGCAGTGAAGCTCCAGGTTCCCCTCCTCTGTGTCCATCACCCCCTTCTCAACAGCTCAACACCAAACGCTTCTCCTGCCGCATCTGCATGGAGGCTTTCCACGGCCGCTCAGACATGGAGAACCACAAGAGGGCGCACATAGAccccaaaacattcaaatgcCCTGACTGTGACTTTACAGCACCTTCTTGGCCAGAAGTCAAGTCTCACATGGCCATGCATGCGTATTTGAGGCCTCATAAATGCAACAGCTGCAGTTTTGCCTCTAAAAACAAGAAGGACCTGAGACGCCACATGATGACACACACCAACGAAAAACCTTACGCCTGTCAGGTCTGCGGCCAAAGGTTTAACCGTAACGGCCATCTGAAGTTTCACATGGAGAGGCTTCACACTCAGGAACCCTCGCCCCGTAAAGCCCGCTCTGTCCCCTCTCAGCAGACCATCATTGTTAACAGTGACGAAGAAGCTTTAGCCACACTGCAGAATCTGCAGGCAGGTCAGGCAGTCATCAGTCCGGAAGGGTTGCAGCAAGCTTTGGGTCAAGAACACATCATTGTGGCCCAGGATCAGACTCTTTCTGACCAGGAGGAGGCAACCTATATTCAACAGATCACAACAGTAGATGGACAGACGGTACAGCACTTAATGCCTGTAGACAATCAGGTCACTGAGGTCCAGTATATCATCTCTCAGGATGGAGTTCAGCACCTGCTCCCTCGGGAATATGTGGTGGTATCTGAAGGAAACCATATTCAGATGGAGGATGGGCAAATCGCTCACATTCAGTATGAGCATGACGGGACGTTTCTGCAGGAGCAACAGATCGCTCTGTCCCAGGATGGACAGATCCAGTACGTCCCCATCACCGCCGAGCAGCAGGTCGTGGGCCCCGAGGACTTGGAGGCAGCCGCCCATTCAGCTGTCACTGCTGTTGCAGATGCAGCTATGGCTCAGGCTCAGGCGGTTTACACCGAGGCCACACCTGAACAACTGGAGCAGCTGCAGCAGCAGGGCATCCAGTATGACGTCATCACTTTTACAGAGGAGTAGagacaagacacacacacacacacacacacacatcatctgAGGTTCGGATGACTGCACTGGACACTGCAAATTCTGACGATCATAAATAACTACTTCCGGAGTTATTCAGTAAGAGGGTGAATGTACAGTTAGACCCTTTCTGAAAATTCTACAACTCATGcctttgtaaatatgtaaaacaatttATCTTTGTGTGCCTACTGTGTTTTGCcttgtaaagaaaaagaaacacaaaagccAAGAGCTGCCTATATAGATAACCCCTGTATATAACTCTGTGTGGCTGTGATGTACTCCGATGGATGCTGCTGTAAACAGTGGACTGGAGGATTGATATcacattgttattattgttcttAAACCGTTCCTAGCTGTTGCTGAAGTGTTTATAACGGAGGGTTGattatttggtttaatttttttttttttgttaagttaACTTGTTtattagcttgtttttttttttattatctcttGTTTagagatttagttttttttagtctCCAGAAAGGAGCTGAAAATGCTTAACAAATAAATCACACCCTGTTTATCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93560 lncRNA upstream 14213 12016726 ~ 12017352 (+) True G63188
XR_006251587.1 lncRNA upstream 32271 11987331 ~ 11999294 (+) True LOC122350250
TU93533 lncRNA upstream 175945 11855386 ~ 11855620 (+) True G63173
TU93510 lncRNA upstream 233594 11770781 ~ 11797971 (+) True G63158
XR_006251588.1 lncRNA upstream 278980 11751164 ~ 11752585 (+) False LOC122350251
XR_006251586.1 lncRNA downstream 7012 12052582 ~ 12054352 (+) True LOC122350249
TU93570 lncRNA downstream 9472 12055042 ~ 12055247 (+) True G63195
TU93587 lncRNA downstream 86327 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA downstream 89327 12134897 ~ 12139410 (+) False G63207
TU93586 lncRNA downstream 89327 12134897 ~ 12139410 (+) False G63207
XM_043246447.1 mRNA upstream 341 12026342 ~ 12031224 (+) True mmp9
XM_043246463.1 mRNA upstream 68511 11900545 ~ 11963054 (+) True cpne5a
XM_043246464.1 mRNA upstream 68511 11900545 ~ 11963054 (+) False cpne5a
XM_043246453.1 mRNA upstream 149422 11869607 ~ 11882143 (+) True srpk1a
XM_043246556.1 mRNA downstream 1945 12047515 ~ 12050968 (+) False LOC122350223
XM_043246554.1 mRNA downstream 1947 12047517 ~ 12050968 (+) False LOC122350223
XM_043246586.1 mRNA downstream 12087 12057657 ~ 12060195 (+) True lamtor5
XM_043246466.1 mRNA downstream 16057 12061627 ~ 12074306 (+) True slc16a4
XM_043246444.1 mRNA downstream 70334 12115904 ~ 12134729 (+) True slc6a17
XR_006251576.1 other upstream 174873 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 190110 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 211082 11817057 ~ 11820483 (+) False fance
unassigned_transcript_1296 other upstream 233905 11797588 ~ 11797660 (+) True trnar-acg_41
unassigned_transcript_1294 other upstream 243141 11788353 ~ 11788424 (+) True trnah-gug_22
XR_006251578.1 other downstream 1939 12047509 ~ 12050968 (+) True LOC122350223
TU93573 other downstream 12112 12057682 ~ 12060197 (+) False lamtor5
TU93955 other downstream 444690 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 444690 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 444690 12490260 ~ 12491924 (+) False G63453

Expression Profile