RNA id: TU93585


Basic Information

Item Value
RNA id TU93585
length 4463
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G63207
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12131897 ~ 12139410 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatatatatatatatatatatatatatatatatatatatttgaaattttaaaagatTGCTGTAAatcaacctgcagttgagtgtcTTTATAAGGTAAGATTTAAGACATATTGAGCTGGAAAAAGAGGACCAGTTTTCTTGAGGAACCAAAATATAGTAACgtagtgaatgtgtgtgtaaagtgtagTCCCTTTATATGTAGTGTGGAGTAAATACTGTGAAGACTGCCTACAGTGATTGAGAACTGCTGCCCTTAAAAACTCACTGTCTAATAATCTTTAAGCCTAAACATACTTTCTGTTTTAGTTTGGTTTATGTGCTCATAAGAGATACTCTGGTCTTAATGAATGGGGttcattttcagtatttattcCAGTAAGAATAGATTCAGGAAGCTGAAGAGGGCTGGAGAGCTGAGGGGAAAGTGTGAAGGAGAGTGGGACAGGAGTTGTGAGTCTTTTTGAAACCCTGATGAGTACAAGGCAAAGCTTTTGATCATCCAGCTGCTTGTAGCTTTTGAGTCTGTCATAAAGGCTGCTGAGTTAAAAATAGACATGGACTAGGCTGGTTACCCAGGGGAACCTATGTCAGAAACAGCGCGGCTGCATGTTAATGAGTCCTacttgggtgtgtgtgtgtgtgtttgtgtgttgagGAGGGGTTTCAAGATGTTCCTGTAAGGCCCTTATTGTATCCCTAGCAACAACCGCatttcacaacaacaacaacaggaaaatcatttaaagggacagatcACACAGTTCAAtccatcatcatttactcagcttCACGTTGCTCCAAACCCATGTGACTCCCTTGCTTCTTTGgagcataaaatattatttttttatttattaatatatcggctatatgctttttttaataaccaatGAAAGTGAACAGGCACTGGGGCTgtcaagcttaaaaaaaaagacaagaaacactaaaaatagcaaaataactCTAATCTTCTctagtcattttaaagctttgtaaaaagaaatgtaaaaattttcacTTCCATTGTAGTgagttgttttagtgtttgacGGCTCCAGTCCCCATtcacttttattgtttatttaggattttttctccttttgtgttttacatCTGATATAAGTAAGAGGGAGTCAATGATGACaaatgagttttcatttttaaatgggcTTAAATGGAAGCGCCTGAACTAATCACACAGTCAGATGAGATTTCGAAAAGAGCACATTGGTTCATAAATCAggaaagatttaatttttttttatacatgcacaATTTGTTTATTGTAGTGTACAGTCCAGTGTGCGCTAAAGTATGATGTTAATGTTGCGCCTGCAATAGCACAAGATTGTCCACAAGGTGTCGCTGTTTGCTGTTGATTAGTGTGTTGAAGGTGTGTCTCTGCGTCCAGCCTCATCCTCCAACCCCGCCGATGAGCACAGCTGGTGCCTCTCATTATCACTTATACTCTAATGGTTAGTGTGAaacatatattgtttgttttgttgttgtttgctcGTGGCAGTTTTGGGTTTGCGCACTTTATCTTCTCTAGACAAGAGGCCTCAGAGCTGCATCTCTCAAGCACAAAACGACACTAGGATTGTCTAAACTACACCGACAAACAGAAGCAACTTCAATTGCTGTATCGCAAGCCAAGCTAAATTTGAACTTGTGGCCCCTCACactgaaataataatgtttttaaaaaatccaatGAGTCAGAACAGCACATGTTCAGACGAAAATCCAAAAATTGTTCATAGTTTCAACAGCtccatgttaataataaaacagacataGAAAAGAGCTGTCCAATTAAAATCTCCTCTGTGGGTAGCTTGAATATTAAATTGTACATCAGGGATCTTCAACAGGGGGTCCACGACCCCTAGGTCCACAACAGTACAGCAGGCCAATTATACatgtgtaattgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatatatgcattaaacaaaaatgcaatattaagtTGAACCAAAGTCAAAGCTAAGAAGCTaaagttcaaataaattatgcattttcattatttgtaataacattttacatacattGTTAGCATGtcaactgtaatatttatttaaaagtgtatcaagataaataagagtatgtgtgtgcatatatatatatatatatttattaatccATTATCTGATGTTAACCAATACTAGGATTAAAACTAAaggttttatataataattaaataaagatccatattatttttttttaaggccagTGTTACACTtctttgttattgttaatacagaatcaaaactacaaaaataaaaagtgaactGGCTCTACCTGATATTCGTTCCTCTTTCATACCATCTGGACTCCCTAAACCGAAGTCAGGCAACCTTATGACCTTCCTCTTTATATCTCAAAAACATCCCCTACTTATATCTTATTTTACATGTCAGTGTTTTTTCCATGACAGTACTCCTGAGTACGTCAACAGTATTTGAAAAGactatataaatgaatacaaactgCACAAATAACCAATCAaggcacaaacaaaaaaaagcaaacatactttttttatcagaagtacaattaattacaaattttatgGATAAAAAAATGTGACTTGAGTGCACCTTTAAGAGGCTGCATTAGCACAAAGCCAAGCACAACATTCAGCAGCAGATTTAAACAACATGATCTAAACATGCGTCATGCACATATACAAACATTGAAATGCTTGCTCTGACTTTCTTGGGTAGGAAGCAATAATCATATCACTCGTATCATTTTCACTCCTAAGAGATGATAAGCACATGCCTCTCTCTATATAATGGTCACAGATAGTGGTAATAGATTATAGTTGTACATCCTGCTGTGATGACATGAAGCGGGAATTCATTAATACATAATCACAAATGCTCTCTGTTCAAATAGCATGAGTTCACTACAATCATTACAGATATCGATCAGACTCATATATACTGAGCCTAATCCACTAAATGTCTTAGACAATCTGGAATTACATGgcacatttttatctttttaaggcACAGACACAACCGCACTTTTTTTCCCGCCCTTTACTTGCAGCTCTGAGACCTCTCGAAACTCATTCCAGCTTAAACGTTGAGCCATATTTTAGTCGATTACAACTGAAGAAATGTACAACAagcatctctttctttttcaagaGGTGCCGGAGGCCATAATGTTTGTGAGCAAAGTGCTATACTGTATATTTCTGTACATTGTGATTCTGAATATTATATCTGTAAATATCGGTGTACATTTTGTTAAACGAACAGTAAGAAATCTATGAAAGGCAAACAGGTGAATTCTTGTAACACTGCTGTGTATGATATTGTTGTACAGTTAAAGCGTAGaatatttaactattttgtACATTGTGCAATAGTGTATGTGTTGTGTATGGGGGTCGTGTCTGTTGtatcaagtgtgtgtgtgcgtgtatgtgtgtaaaaaaacaaaacaaaagccgttttatttttgctattttgatgTTGTGAGTCCCTTCCCTTAATTCACCTCCACCTGtgagttttggttcctctgtGAACCTCATTTGTGTGTTCACGCCGCAATTGTCAGTTAGTGCACTGAACAAAACCgttcttttatgcttttaatgtaAACGTTGGTTTAATCTTCGATGTGGACGTCGGCTTATCATACAGACAGCACCTTCTGTACGCTCCTCTGGCCTTAGTATCTGCAATATTATTGTTTGCTGCTTCTAGGTTTTCGTCAAAagtcaaaatgcactttttacgTTTAGTCCGACTATATTCAGCGCTATCATTATTAGTAGTGTTAGATGATCGTAACACACACTTAGCTGGGACATTTCCGCACTTCGTGTCTCCGACGTATTCGAGCACTAAGGAGGAAAGTCAAAAATAGATACTTTTGCACTCTGGAAGTGCTATTTTAATCATTAGAAATATACTTGATGTGAATGTAAACGTATTTTTAATCCCCCAAACTGCTGTAAAGATAATTTAGTAAGAAGGACACTGATGAAACGTGTAATATTACCCAGTCTACACTTGTGTGCTGTACTAGTCTTAGATTTATAAGCAATATTTCTGCAGGCATTTACTTTGGTTGGACGTTGGTCAGATGGTACGTGGGGCCACAGGAAATGCTGTTGCTCTGAGAGTAGCGGCGTTTGTAGGGCTTCACTGCTAAAGAAGAGCAATGCTCTTAAAACTTCAGTCAAACCCTGTTCTGTTGGGTGATAGCACATTCAGATCACTAGCCACAGTATACTGTTAGCTATACAAGGACTATTTTAATGTCTCAGTGTCATTGATATTGTACAGTATTTCCAATTCACTTGGGAAAACGCTGagttatgaatattaaatatggaCCATCACAAAAACGAACAATAAAAAGTTGGTTCTCACGCTGAAATGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93570 lncRNA upstream 79650 12055042 ~ 12055247 (+) True G63195
XR_006251586.1 lncRNA upstream 80545 12052582 ~ 12054352 (+) True LOC122350249
TU93560 lncRNA upstream 117545 12016726 ~ 12017352 (+) True G63188
XR_006251587.1 lncRNA upstream 135603 11987331 ~ 11999294 (+) True LOC122350250
TU93533 lncRNA upstream 279277 11855386 ~ 11855620 (+) True G63173
TU93579 lncRNA downstream 40777 12180187 ~ 12189479 (+) True G63204
TU93608 lncRNA downstream 101231 12240641 ~ 12326938 (+) False G63218
TU93610 lncRNA downstream 101231 12240641 ~ 12327938 (+) True G63218
XR_006251582.1 lncRNA downstream 408334 12547744 ~ 12570426 (+) False LOC122350247
XR_006251583.1 lncRNA downstream 408334 12547744 ~ 12570426 (+) False LOC122350247
XM_043246444.1 mRNA upstream 168 12115904 ~ 12134729 (+) True slc6a17
XM_043246466.1 mRNA upstream 60591 12061627 ~ 12074306 (+) True slc16a4
XM_043246586.1 mRNA upstream 74702 12057657 ~ 12060195 (+) True lamtor5
XM_043246556.1 mRNA upstream 83929 12047515 ~ 12050968 (+) False LOC122350223
XM_043246554.1 mRNA upstream 83929 12047517 ~ 12050968 (+) False LOC122350223
XM_043246543.1 mRNA downstream 57858 12197268 ~ 12199793 (+) True ngrn
XM_043246542.1 mRNA downstream 58026 12197436 ~ 12199793 (+) False ngrn
XM_043246559.1 mRNA downstream 76368 12215778 ~ 12218469 (+) True sypl2b
XM_043246445.1 mRNA downstream 81482 12220892 ~ 12228499 (+) True atxn7l2b
XM_043246493.1 mRNA downstream 112821 12252231 ~ 12260214 (+) True gpr61
TU93573 other upstream 74700 12057682 ~ 12060197 (+) False lamtor5
XR_006251578.1 other upstream 83929 12047509 ~ 12050968 (+) True LOC122350223
XR_006251576.1 other upstream 278205 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 293442 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 314414 11817057 ~ 11820483 (+) False fance
TU93955 other downstream 350850 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 350850 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 350850 12490260 ~ 12491924 (+) False G63453
TU94067 other downstream 498820 12638230 ~ 12638565 (+) True G63533
TU94080 other downstream 605393 12744803 ~ 12747301 (+) False LOC122350405

Expression Profile