RNA id: XM_043246542.1


Basic Information

Item Value
RNA id XM_043246542.1
length 1307
RNA type mRNA
GC content 0.44
exon number 4
gene id ngrn
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12197268 ~ 12199793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATAGTATTTGACATTATATGGTTGCAGAAAACCGAAGTTCGAGTTATAAAAAACAAATGGGCACGCCGTGGAGAATGGCCCATATgttggccaccaaactggcccTTTTCCCAGGACCCGCTGCCTGCCAGGTTTGTCGGCATGCCAGTCGAGACGCATACGGGTGGATGTCACAGAGGTATTCTGATTCACATCCAAAACAGAGACAACAGGAAGACGTGTTCGAAGATGACCATGATATGGATCCGGCAGAAGCCAAAATGAACTCTATCATTAGTGAAGAGAGGAGAAGGCGTAAGGCAGCAAAGTTTCACATCATCAAGAGAAAAATGAGCAGTCCTGGAGCCCCAGAGAGAAGACTCAACTGGGATGCTATTCAGCAGATAAGGTACTTAAAGCAGGAGTCACCAGAGGAGTGGACACTAGAGAGATTAGCAGCAGGTTTCTCTGTGAGCCCTGATGTCATTTCCAGAGTCCTCCGCGGCAAATTCGTCCCATCAGCGGTTCGAAAGCTAAAACAAGACTCGAAAGTCTTAGCTAATACTGCGCCACAGTTTCTCAGAGATGGCAAAACCGAACAGTCCGGACTGTCAAAGACCTCAGCACCAGCCATTCTCTCCTCTGGAAACACAGGTGCCCTAACAGCACGGAGTACGGGAGCGCTCGCACTGAGGGACACCGACACTAGACTCGTGCCCTCTAGTGGTAGCGTACTACCATCTCAGCTATCAGCGACTCCTGCTTTACAAGAGCAGCCTGACTCTGCAGCTGATATGGACATGAGGGATGATTCAGAGTCAGATGAGGAATGGGATGGAGTGATTCTGACCGAGGAAGAACTAGAGCACTTTGTACAAACACTGAAGGAAAAGCCCAGTCCAGTGGAACAGAAGGGAAGAGAGTTTTTTGACAGTGAAGGTAACTTCCTGTATAGAATTTGAGTGGCTGCAAGCCATACATGTTGAAAAACACTTGTTGCTCAAGTCTAGGCTTGTTCTTGAATGAATATTACTTAGTTATAGTTTGTATATATGGCACATTTTACAGTGCCTACcctttacatttcatttttttttttttttttttgtacaaaaccacaaagcagaaataaataacacaacatTAATGGGACAAATCAATTTATTTCTCAAACAAACAGTTCTATTCCAAATATacagagcaaaaataaaagataaagtcGGAATTGCTGTATATGTACAGAGCTTCACaactaatatatacattaattttgCACAGCAAGAAAAGTGTACCACctcttataaataaaatcactgcCACAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93579 lncRNA upstream 7957 12180187 ~ 12189479 (+) True G63204
TU93587 lncRNA upstream 58026 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA upstream 58026 12134897 ~ 12139410 (+) False G63207
TU93586 lncRNA upstream 58026 12134897 ~ 12139410 (+) False G63207
TU93570 lncRNA upstream 142189 12055042 ~ 12055247 (+) True G63195
TU93608 lncRNA downstream 40848 12240641 ~ 12326938 (+) False G63218
TU93610 lncRNA downstream 40848 12240641 ~ 12327938 (+) True G63218
XR_006251582.1 lncRNA downstream 347951 12547744 ~ 12570426 (+) False LOC122350247
XR_006251583.1 lncRNA downstream 347951 12547744 ~ 12570426 (+) False LOC122350247
XR_006251584.1 lncRNA downstream 347951 12547744 ~ 12560590 (+) False LOC122350247
XM_043246444.1 mRNA upstream 62707 12115904 ~ 12134729 (+) True slc6a17
XM_043246466.1 mRNA upstream 123130 12061627 ~ 12074306 (+) True slc16a4
XM_043246586.1 mRNA upstream 137241 12057657 ~ 12060195 (+) True lamtor5
XM_043246556.1 mRNA upstream 146468 12047515 ~ 12050968 (+) False LOC122350223
XM_043246559.1 mRNA downstream 15985 12215778 ~ 12218469 (+) True sypl2b
XM_043246445.1 mRNA downstream 21099 12220892 ~ 12228499 (+) True atxn7l2b
XM_043246493.1 mRNA downstream 52438 12252231 ~ 12260214 (+) True gpr61
XM_043246539.1 mRNA downstream 63871 12263664 ~ 12275773 (+) True gnai3
XM_043246430.1 mRNA downstream 86884 12286677 ~ 12305712 (+) True ampd2b
TU93573 other upstream 137239 12057682 ~ 12060197 (+) False lamtor5
XR_006251578.1 other upstream 146468 12047509 ~ 12050968 (+) True LOC122350223
XR_006251576.1 other upstream 340744 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 355981 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 376953 11817057 ~ 11820483 (+) False fance
TU93955 other downstream 290467 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 290467 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 290467 12490260 ~ 12491924 (+) False G63453
TU94067 other downstream 438437 12638230 ~ 12638565 (+) True G63533
TU94080 other downstream 545010 12744803 ~ 12747301 (+) False LOC122350405

Expression Profile