RNA id: XM_043246430.1


Basic Information

Item Value
RNA id XM_043246430.1
length 3943
RNA type mRNA
GC content 0.48
exon number 20
gene id ampd2b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12286677 ~ 12305712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGGTGCACCTCTTCCGGCTGACTAAACTTTGAGCCCTGAGCCGGCATCTGGCTCGCCGTGTTTCCTCTTGTCTCCTGGGGCTGTGAGAACGAGGAGCATTCCTTTATCATCATCGCAGCATTATTCAGATGCCCGCCGTACTCTCGCGGTCACGTTCCACCTGGCTCGAGGGTTTCCATGGAAACGGTGCGAACTGACAGCATGCAGGCAGCGTGTGGTAGCGTGTGAGTGGGCACTGGGAGGTGTGGGGAGGAGCCAGTTCCCCCACTGCAGCATCCGAAGAGCGGGGATCTCTCTttcacgcacgcacacacaaacacgcacacacacacatccgaACATCCTCCTTACTGCAATCAAAGCCCCTCTGGACCGAGCGTGTGCCCCCCCCCCTGCTAGGAATCATCAGTGCCTTAATCAAGCAGTGTATTGTCCGTCTCTGGTGAATCTCAAGCCAAAATGTCTTCTAAGCTGCCTTCAGGCAAACCCACGTCCCCTTTCAGGAAGAGAGGCAGCCTACAGTACACAGCCAGTGGAGGATGGAAAAGATATCCTTACTGACCTGACTGACTCTGATTACTCAATCTATTCTTAAAAGCACAAATGTTAGTGTGCGACCAATTTGCTCTCCTCTTTGTAGAGTGTGGTATGGAAGAGGAGGGATTCTTTAAAGGAGCCCTTTTACTGCCTCCCCCTCAGCCACCATTTTGCTactattttgagttgtttttttccaaatccaCCCAACCCTTTACTTCCCAAGATTCCCAGGGACCTCACAAATAAGATCTCCGTGTTGGCCGACACCTCCTCACATCCCAGTATTCTTTGCCTGGCAACCCTGTAACCAAGCACGGCCACATTGACCTACGCACATCCATGGATGGCAAATACAAAGAGATCGCAGAGgagCTGTTCTCCCGAAGCCTGGCAGAGAGTGAGATGCGGAGTGCTCCGTACGAGTTCCCTGAGGAGAGCCCTATTGAGCAGCTGGAGGAGAGGCGGCACCGACTGGAGCGGCAAATCAGCCAGGATATAAAGTTTGAGCCTGATATCCTACTGCGAGCCAAACAGGACTTCATGAAAACTGACAGTGCGACAGATCTGGAGTATATGAAAGAACAAAGCCAGGCGCCCAAAGAACTCTATCCCGAGAGAGAGCTCGTCCCTGAGAGGGAGTATCAGAGAGTCACCATCTCTGGAGAGGAGAAATGTGGGGTTCCATTCACTGACCTGCTGGATGCTGCTAAATGTGTGGTCAAAGCTCTGTTCATCAGAGAGAAGTACATCTCTCTGTCCATGCAGAGCTTCTGCAGGACCACAGCACGTTACCTGCAGGAGGAGCTGGGTGGCCGACCTCTAGAAGTCAACGCCTTTGAGGAGATGCCGGAGTCCTCTGTATCTGCGGATGCAACGGTCCACCCACCCGTGTCAGAAACCCACCCCTATGAGGTACTAGACCCTGCCAGCATGCCCCCGGGTTTGGGCTACACCTGCAAGATGGTGGATGGTGTTGTTCATGTGTACACGCAAAATTCCTCCGAACTAGACTTGCCGTACCCAGACCTGCAGGAATACATAGCTGATATGAACATGATGATGGCGCTCATCATTAACGGGCCGGTgAAATCTTTCTGCTATCGCCGGCTGCAGTACCTCAGCTCCAAGTTCCAGATGCACATTCTCTTAAACGAGATGAAAGAGTTGGCGGCACAAAAGAAAGTCCCTCACCGTGATTTCTACAACATCAGGAAGGTGGACACGCACATCCATGCCTCATCCTGTATGAATCAGAAGCACCTGCTGCGCTTTATTAAAAGAGCCATGAAGAAATATCCAGGTGAAATCGTCCATGTAGAACAAGGCCGAGGACAGACTCTATTAGAGGTGTTTGAGAGCATGAACCTCACGGCCTTTGACCTCAGTGTAGACACTCTGGATATGCACGCGGACCGTAACACATTTCACCGCTTTGATAAATTTAACTCCAAATACAACCCCATCGGAGAGTCCATCCTCCGAGAAATCTTTATCAAGACTGACAACCATGTTGAGGGCAAATACTTCGGACACATAATCAAGGAGGTGATGGCAGACCTGGAGGAGAGCAAATATCAGAATGTGGAGCTGCGACTTTCCATCTACGGTCGCTCACGAGATGAATGGGATAAACTGGCTCAGTGGGCTGTCAAACACAAGGTTTATTCAGATAACGTGCGCTGGCTGGTGCAGGTGCCACGGTTATTCGATGTGTACCACACCAAAAAGCAACTATCTAACTTCCAGGAGATGCTAGAGAACATCTTCATGCCACTATTTGAAGTCACAATCAATCCCAGCAGCCACCCACAGCTACATCTCTTTCTACAACATGTTGTGGGGTTTGACAGTGTAGATGATGAGTCCAAACCTGAGCATCACATCTTTAATCTGGACAGTCCAAAACCTGTGAACTGGACGGAGGAAGACAATCCTCCTTACTCGTATTATCTGTACTACATGTATGCGAATATGACTGTACTCAACCACCTGCGCAGGCAAAGAAACTTGAATTCATTTGTGCTACGTCCACACTGCGGAGAGGCAGGGCCTATTCACCACCTTGTGTCTGGATTTATGCTGTCAGAAAATATTTCCCATGGCCTGCTTTTGAGAAAAGCTCCAGTGCTGCAGTATCTGTATTACCTGGCTCAGATCGGCATCGCCATGTCCCCGCTTAGCAACAACAGCCTTTTCCTCAGTTACCATCGAAATCCTCTACCTGAGTACCTTTCCAGGGGCCTCATGGTGTCTTTGTCCACTGATGACCCACTGCAGTTCCACTTCACAAAGGAGCCGCTGATGGAGGAGTACAGCATCGCTGCTCAGGTGTGGAAGCTGAGCTCGTGTGACATGTGTGAGCTGGCCCGAAACAGCGTGCTCATGAGTGGATTTTCTCACCAGGTGAAAAGCTATTGGCTGGGGCCGCATTACCTCAAAGAGGGGCAAGAGGGCAACGACATCAGACGCACTAATGTACCAGACATCCGAGTGGCGTACCGCTTCGAGACGCTGTGCGAGGAGCTGAATCTGATCACCCAGGCTGTGCGATCAGAGGAGCTGGAGACGGTCGAAGAGCAGGGCTCCCTGTGCACGGCTACAGGACCAGCCAGACTTTAGCTCTCAATTATTAATCCCAGTACAGAATGTGAGTGGAAGGTTGATTCAGGGAAATGTGGCACAGTCCTACTGTGTTTGATTCCACTGGTGTtcaactagattttttttatttgacttcaTTTAGGAATTTGCTAGAGATGTACTGTTGTTTTTTGGTTGTTAAGTGCAGGTTTTAAAGGCCTCTTTGCTAGGAAGCAAAGAGAATTTGCACAAAGGAAAGGCCAATGTTGTGTTtgacaaaagcacacaaacattttcagaataCCTGGAAACTAGAAGGCTCCAGATATTCAGTCAAGCATCAGGAAACCCCAGAAATCTCCCCCTTTGTTACTGTGGACCTTACACTGTCCTTAACCTGCAGTCCAGCATGAAGATCAGTGAAATGGTTTACACTATTATAGATAATAAACATTTGGTGTCGCTTGTACACTTGCTCTGAACGCTAACAGCCATAAACATTTGTTCTTTGGCTACCGTGTGTGAGCTCGACTACCTACGCACATCTCTGCCATGAGCTGTCAACAtcctgtcatttttaaatggatttttatcTCCTTTACGTTCGTGATTTTGACCGGTTCTGTTCTAATACGTTCgttattgtgattattatttattttatagtggTTGTATCCTTTGGTCGTTTGGCCATTTTTATGTGTGTCTGTAATTGAATAATTGTTAGTGCTATTTGTTGTAAATCAGACTTGATAATATCAAAGTGAAGTTTATTTTTCCGCTGTATTCTGtatctcaaaaataaaatataattctgaaa

Function

GO:

id name namespace
GO:0006188 IMP biosynthetic process biological_process
GO:0003876 AMP deaminase activity molecular_function

KEGG:

id description
K01490 AMPD; AMP deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93579 lncRNA upstream 97198 12180187 ~ 12189479 (+) True G63204
TU93587 lncRNA upstream 147267 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA upstream 147267 12134897 ~ 12139410 (+) False G63207
TU93586 lncRNA upstream 147267 12134897 ~ 12139410 (+) False G63207
TU93570 lncRNA upstream 231430 12055042 ~ 12055247 (+) True G63195
XR_006251582.1 lncRNA downstream 242032 12547744 ~ 12570426 (+) False LOC122350247
XR_006251583.1 lncRNA downstream 242032 12547744 ~ 12570426 (+) False LOC122350247
XR_006251584.1 lncRNA downstream 242032 12547744 ~ 12560590 (+) False LOC122350247
XR_006251579.1 lncRNA downstream 242032 12547744 ~ 12554838 (+) False LOC122350247
XR_006251581.1 lncRNA downstream 242032 12547744 ~ 12554838 (+) False LOC122350247
XM_043246539.1 mRNA upstream 10904 12263664 ~ 12275773 (+) True gnai3
XM_043246493.1 mRNA upstream 26463 12252231 ~ 12260214 (+) True gpr61
XM_043246445.1 mRNA upstream 58178 12220892 ~ 12228499 (+) True atxn7l2b
XM_043246559.1 mRNA upstream 68208 12215778 ~ 12218469 (+) True sypl2b
XM_043246543.1 mRNA upstream 86884 12197268 ~ 12199793 (+) True ngrn
XM_043246588.1 mRNA downstream 491 12306203 ~ 12308908 (+) True gstm.1
XM_043246569.1 mRNA downstream 7935 12313647 ~ 12315719 (+) True LOC122350230
XM_043246468.1 mRNA downstream 22832 12328544 ~ 12334608 (+) True LOC122350181
XM_043246547.1 mRNA downstream 29135 12334847 ~ 12337129 (+) True dnase1l1l
XM_043246435.1 mRNA downstream 32061 12337773 ~ 12342463 (+) False si:dkey-183p4.10
TU93573 other upstream 226480 12057682 ~ 12060197 (+) False lamtor5
XR_006251578.1 other upstream 235709 12047509 ~ 12050968 (+) True LOC122350223
XR_006251576.1 other upstream 429985 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 445222 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 466194 11817057 ~ 11820483 (+) False fance
TU93955 other downstream 184548 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 184548 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 184548 12490260 ~ 12491924 (+) False G63453
TU94067 other downstream 332518 12638230 ~ 12638565 (+) True G63533
TU94080 other downstream 439091 12744803 ~ 12747301 (+) False LOC122350405

Expression Profile