RNA id: XM_043246569.1


Basic Information

Item Value
RNA id XM_043246569.1
length 1160
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC122350230
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12313647 ~ 12315719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGGGCCCAGCCCCGCCCCATCATTCATATCACACTCAGGTGCGCTCGCTCCTCAGACATCCGTCCACTCTCCTCCTTTCATTCAGCTTCTGCACAGCGCTGCTCGTTGCAAGAGACAAGATGGCAATGAAATTGGCAAACTGGAAAACACGCGAGCTTGCTCAACCGATCCGTCTTCTGTTGGAATACACTGGTACTAAGTATGAGGAGAAGTTCTATCCTTGTGGTGATGGTCCCAACTACGACAAAAGCTGTTGGATTAATGAGAAAGAGAAACTTGGGATGAACTTTCCTAATTTGCCCTACCTAGTGGATGGAGACAAGAAAGTGGTCCAAAGCAATGCCATAATGAGATACATCGCCCTCAAACACAACCTCTGTGGGGAAACTGAAGAAGAGCAGGTGAGAGTTGATATCTTGGAAAACCAGGCGATGGATTTCCGCAATGGTTTTGTCCAGCTTTGCTATGGAGACTTTgacaaaaataaatcaagctaCAGTCAGAAATTGCCAGGATCTCTAAAGCAGTTCTCTGAATTCCTGGGTGACAGGAAGTGGTTTGCTGGGGACAAGATCACATTTGTGGACTTCATCATGTACGAGCTTCTGGATTTGCATCTTATGTTTTGCCTGGACTGCCTGGATAAGTACATAAACCTGAGACATTTCCAGGATAGATTTGAGAGCCTTGAGAAGATCGTAGATTACATGAAGTCGAACAGGTTCATCAGAAATCCTGTGAACAACAAGATGGCCAAATGGGGAAACAAGGAGTGAAAAATAACAAGATTTTgtcttgatttgttttttggaCAACCTtcccaataataaaaaaaaaaagaataactaAATTTACATTCTAATAAAAAAGTGTATTAGATATTTTACTGTTtagctttcctttttaaataaaaacatgaattcaGGAACTTATTTttacccaataaagcattattgCTTCGAAATGAAATGGTCATGAATGATATAATGCAATCCTGCATtcaaaacaggtttttaaaccAAAGGCATCCCGAACGAACTGTACTGTTTTGGATTGTAGaacttttttgtaaattgaaacttaaatataacaaacaaattTAACAACAAAATCAAAAGCTTACTTTAAGACCAATAAACCATGGCTACTAATGTTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004364 glutathione transferase activity molecular_function

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93579 lncRNA upstream 124168 12180187 ~ 12189479 (+) True G63204
TU93587 lncRNA upstream 174237 12131897 ~ 12139410 (+) True G63207
TU93585 lncRNA upstream 174237 12134897 ~ 12139410 (+) False G63207
TU93586 lncRNA upstream 174237 12134897 ~ 12139410 (+) False G63207
TU93570 lncRNA upstream 258400 12055042 ~ 12055247 (+) True G63195
XR_006251582.1 lncRNA downstream 232025 12547744 ~ 12570426 (+) False LOC122350247
XR_006251583.1 lncRNA downstream 232025 12547744 ~ 12570426 (+) False LOC122350247
XR_006251584.1 lncRNA downstream 232025 12547744 ~ 12560590 (+) False LOC122350247
XR_006251579.1 lncRNA downstream 232025 12547744 ~ 12554838 (+) False LOC122350247
XR_006251581.1 lncRNA downstream 232025 12547744 ~ 12554838 (+) False LOC122350247
XM_043246588.1 mRNA upstream 4739 12306203 ~ 12308908 (+) True gstm.1
XM_043246431.1 mRNA upstream 7935 12289018 ~ 12305712 (+) False ampd2b
XM_043246468.1 mRNA downstream 12825 12328544 ~ 12334608 (+) True LOC122350181
XM_043246547.1 mRNA downstream 19128 12334847 ~ 12337129 (+) True dnase1l1l
XM_043246435.1 mRNA downstream 22054 12337773 ~ 12342463 (+) False si:dkey-183p4.10
XM_043246434.1 mRNA downstream 22056 12337775 ~ 12342463 (+) True si:dkey-183p4.10
XM_043246548.1 mRNA downstream 112211 12427930 ~ 12429842 (+) True tmem81
TU93573 other upstream 253450 12057682 ~ 12060197 (+) False lamtor5
XR_006251578.1 other upstream 262679 12047509 ~ 12050968 (+) True LOC122350223
XR_006251576.1 other upstream 456955 11853594 ~ 11856692 (+) False si:ch211-163l21.10
XR_006251698.1 other upstream 472192 11841075 ~ 11841455 (+) True LOC122351135
XR_006251577.1 other upstream 493164 11817057 ~ 11820483 (+) False fance
TU93955 other downstream 174541 12490260 ~ 12491924 (+) True G63453
TU93956 other downstream 174541 12490260 ~ 12491924 (+) False G63453
TU93957 other downstream 174541 12490260 ~ 12491924 (+) False G63453
TU94067 other downstream 322511 12638230 ~ 12638565 (+) True G63533
TU94080 other downstream 429084 12744803 ~ 12747301 (+) False LOC122350405

Expression Profile