RNA id: XM_022672598.1


Basic Information

Item Value
RNA id XM_022672598.1
length 4194
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC103029757
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2964024 ~ 3044763 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCGCTGCAGTTCAGAGGCGGTGCTGCTGTCACACTCAGCTCCCCTCCAgcatctatctatcgatctatctatttAGCCCAGCAACCTCCTGATCACCCTGAGGAGCGACCTTCACCAGAATTCTTtatctaaataactaaaaaacaaacaaatctacATACTTTCCTAAAAGGCTCATTTTTTGGAGGAGTTTTTGGAGTCTCGTGCGTCTGCAGCCTGAGGATCAAGCAGATAACGTTAGATGTCCAGGTAGCGTCTTGTGCATCTCGTGCATCTCACCAGCAGCCTGTTAAGTTGgaaacttaaactaaacttcTCTGTGGAGCAACTTGTGGagactattactactactactacttttgtgtgtgtgtgcgcgtgttgGATCACTTCTACACTTTTTCCACGCTCGTGCGAAACATGCATCGCGAGCCTCCTCTGCTCGCCCTgttgctcctgctgctgtttcttcaCTTCCCCGCGCGGCTGCGCGCACTCCCGGACTCCGCGTGCACGCCATGCGCGCGCCGCGTCTGTCCGAGCGAAGCGGCAGTGGGAGCGGAGGACAGGACGGGAGCGCGCGCCTGTGAGGACGGCACGCGCGCCCTCGCTCGCGACCCCTGCGGCTGCTGCGCGCCCCGCTGCACGCGCCTCGCGCTGGAGCTGTGCGGCGGGACGGACTGGACGCTGGGATACTGCGGCCTGGGACTCACGTGCGCCGCGCTCAACCGCACCGGAGCCGCCGACATCCCCGAGGTGGGGGTGTGTAAAGAGCTCCGCGGAGCCGCGGACGCTGGAGCGGAGGACGAGCGCTGCCCCCTGCTGAGCGGGTGTGACCGTGTgagtggagagtgtgtgtgtgagtccaCACACTCCTGCATCAGGACTTTCAGATACCCGAGCAGAGAGTCGTGCGCCAGAGCCGCCAAGACAGaggcTCGACGGCATGAGCAGGAGCACAGAGACTCGAGGCACAAGGAGAAGTTTGTGGGTCCGGCTAACCCAGCCTGCATCTTCTCCGGCTGTAACCTGACCGCAAAGGGCTGCGAGTGCACCTCCCAGAGCTGCCACGCCCACTTCACCTACGCCAACCGCAGCCAGTGCCAGCTAGCAGCAGaggaGCTGAAATGTGCTGGGATCATATGCCCAACTCTACCTCCTGCCGATTGCCCTCCTGACTCAGTATTGACCCACAGCTATACGCCCCCTGGAGGCTGCTGCCCCACACTGCCGCCTCAGTGCACCTGTAGTCAGTGCCCACCCCAGCCAGAATGCCCCAGCGGACACAGAGCCATCCTCATCAACGAGGCCACAGGAGCACCGGGGAACTGCTGCCACACTTACGACTGCCAGACAGTTTCCCCCAGATGTGTGCACAACGGGAAGAAGTTTGCTGAGGGCGAGGTGTACCGTATGGACTCCTGCTGGCTGTGCCAGTGCCGAGGAGGCGTCTCCTTCTGCTCCAAAGCCGAGTGTGCTGAGCTGGACTGTGATAACTTCTACATCCCAGAAGGAGAATGCTGCCCAGTCTGCATAGATGTGGAGCTGTTGTCAGTGGAGAGCACCAAGGCCAGCTGCTGGGTGAACCACAAGCTGAGGCAGCACGAGGAGCAGTGGAAGGAGGACGACTGTACGTTCTGCCAGTGTGTGGATGGAGAACCTCAATGCACAGCCATGGCCTGCAAACAGACCTGCCAGAACCCCGTCAAGATCCCAGGAGAGTGCTGCCCCTTCTGTGAGGAACCTTCCTACGAGACCGTGAGCCCCCTACTGTGCCCCCCACTCCAAAACTGCTCACTATCGGCACACGACTGCCCGTTTGGCTTTCAGCAGGATCACAACGGCTGTCTGAGGTGTCAGTGTCTTGGCAACGACTCCTGTCCTGAATTGTCGAGGTACTGTAACCTGCAGTGCCTGATGGGATACGAGAAGGATGACTTTGGCTGTGAGGTGTGTGAGTGCAGCTTGCCCTCTAACTGTAAACCTCTGACCTGCAGCAAGACCTGCCCATATGGATACATGAGGAACAAGCATGGGTGTGAGATGTGTCGCTGCATTAAGTGTCCTCCCTTTACCTGTGATAAGCAGTGCAGTGAAGGCTACAAGCAGAACAGGAAGGGCTGCAGTGTGTGTCTCTGTAAAGAGGGTGAGCATGCTCCCAGCACTActacacctcctcctcctccaccgcTGCCCAGCTTCTGTCTCACCGCCCAGGGCCAGCGATTCGAGGAGGGCGACGGTTGGCACGATGGCTGCAGAGAATGCTACTGCCACGCTGGACGTGAGATGTGTGTGCTCATATCCTGCCCCGTGCCCAGCTGCAAACAACCAGTGCTCAGACCTCACCAGTGCTGTCCCACCTGTGAGGACGAGGTGGGCAGTGGGCAGCCGGAGGGGATGGATATGGTGGTCTGTCGAGCTCCTGGAGGGGATCTCTATGTGGAGGGTGAAACGTGGAACCTGGATGAATGCACTCGCTGCACATGCAGACAGGGCAGAGTGCTGTGTGATACTGAAGCATGTCCGCCCACTCTCTGCCAGGCACCAATCAGGAGCAAGGACACCTGCTGCTACACCTGCCCAGAGGACTCATCCAGTTCCCTGCTTCCCGTCAACACCAGCCAGAGAGAGTACTGCATCTCCAGTGAAGGAGACGTCCTATTGGCCGGAGACTCGTGGAAGCCTAACGCATGCACCAGCTGCATCTGCAACAACGGGACTGTTCAGTGCTTCTCTCAGAGATGTCCTGTGGCCAACTGCAGAGTTCCAGTCCTGCGTAAAGGCCAGTGCTGCCCACACTGTTTAGTCACGACAACCTCAGTACCGATGATGGTGTCGACCACAATGGCCAAACCCAAAACCAACACAACTGCttctaccaccaccaccactaccattaccaccacttcttcttcttctactactactgAAAGAACAGTTGTTCTGACCACCACTCATACACGGCCTCCCGTGGTTGCAATCACAGATGATAGAGGTCTGAGCAAGGACGGCCCAAGCCAGGCAGAAATGTCCCTCATCTACCAATCAGCAGCCTGGATCCTGGCGGGTCTTCTCTTGGCTATAGTCATCTTTCTCATCGTAGCCATTCTCATCAACAAAAAGAAGAAGTGGGTTCAGATGTCCTGCTACAGTGCACCCAAAAAGGCCGTGATCCTGAAGAAGCACGTGAACAAGAACTCGGTTGTGTACATGGAGCCGTCCAAGGAGAACAAGTTCCAGAGCGTGAAGAACGACTGCGGCGTGACCTTCTCCCCAGACGTGAGCTCGCCCTGCGGGGAGCGGATCAGCATCCCGCGCGCCAAGCTCGGCAACGGACACGCGAGGGTCCAGCGCTAACATGTCCTGAGGTCAGCTGGCAGGACTTCAGGAAGTTTCCCTTTCATCTCGCCTCCGTTTCACACACATCCGTGGAGCTCACGAGAGAAACTCTTACCACATGCTGAGGATTCTTCTTCTTCGAAGGATTGTGAAACTCTCTCTTTATTACATTGTTGTTTCGCCTCTTCTATCATGTTTGGAGCTTTAAAAACTCGACATTGCTGCCTGAGAAtcagcagcaacaacaacaacaaaaaggaggaagaggaggaagaactGTAGTTTCATTGACGTTAAAGCCATGCCATCTTGAAACGATGAGCGACAATGGCTTTACGAACAGCTTATGAACATCTGATCACTTTGAAgactgttatatatatacacatttgttatttgtattaagATACTACCAACTCCAAAAAGGAAGATCTGACTTCCTGTCTCCTTCCTGTCAGAGTGACACCACCTAAAAGGGCAGCTACCTGGCTGCTTTCCTTCACAgacgttttattttattttttttatctggagaaaaaaataaaacacagacccCGCTATGACATGGTTGAGGGTCTGTCTGGTGCCCAATGGAAGCAatggaagcaaaaaaaaaaaaaaaaaaaaaaaagactcctGGTCTCTGGTTTACATATGATGCATTCATCATTTCTAGTTCAAAGTGTTTTATATACTGCCTGTAGTATgaactagctagttagttagttagttagttagtcacTTCTGTGCGATGCTTTCTGCTATGGCTTCCTCTGCTTGAGTGGCAGCAGTCAGTCAAAAACTGACAATTAAAAACAGTTCCtttgattaatcaaatgtaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104867 lncRNA downstream 102249 2863844 ~ 2864649 (-) True G77755
TU104860 lncRNA downstream 157132 2713161 ~ 2809766 (-) True G77749
TU104864 lncRNA downstream 199600 2767046 ~ 2767298 (-) True G77752
TU104806 lncRNA downstream 454560 2501347 ~ 2512338 (-) True G77705
TU104794 lncRNA downstream 489139 2474020 ~ 2477759 (-) False G77696
TU104901 lncRNA upstream 61622 3106385 ~ 3106585 (-) True G77779
TU104925 lncRNA upstream 168166 3212929 ~ 3213153 (-) True G77801
TU105035 lncRNA upstream 225993 3270756 ~ 3284677 (-) True G77888
TU105038 lncRNA upstream 251585 3296348 ~ 3297328 (-) True G77891
TU105044 lncRNA upstream 265657 3310420 ~ 3318565 (-) True G77894
XM_015608038.2 mRNA downstream 62250 2900144 ~ 2904648 (-) True LOC103025229
XM_015608044.2 mRNA downstream 71217 2883004 ~ 2895681 (-) False LOC103024903
XM_007257922.3 mRNA downstream 71218 2881109 ~ 2895680 (-) True LOC103024903
XM_015608042.2 mRNA downstream 71219 2881109 ~ 2895679 (-) False LOC103024903
XM_007257924.3 mRNA downstream 91262 2869496 ~ 2875636 (-) True LOC103025537
XM_022672601.1 mRNA upstream 131035 3175798 ~ 3206686 (-) True bmf
XM_007257920.3 mRNA upstream 131035 3175798 ~ 3206681 (-) False bmf
XM_007257936.3 mRNA upstream 257396 3302159 ~ 3303567 (-) True ankrd9
XM_022672608.1 mRNA upstream 600334 3645097 ~ 3714357 (-) True prkd1
XM_022672609.1 mRNA upstream 600334 3645097 ~ 3714016 (-) False prkd1
TU104742 other downstream 776245 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 811558 2150788 ~ 2155340 (-) True gchfr
TU104716 other downstream 811558 2151155 ~ 2155340 (-) False gchfr
TU104718 other downstream 811558 2151438 ~ 2155340 (-) False gchfr
TU104704 other downstream 919657 2042998 ~ 2047241 (-) True LOC111193168
TU104917 other upstream 152366 3197129 ~ 3206216 (-) False bmf
TU105040 other upstream 252819 3297582 ~ 3348989 (-) True G77892
XR_002650301.1 other upstream 588331 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 646844 3691607 ~ 3714277 (-) False prkd1
TU105210 other upstream 789799 3834562 ~ 3840570 (-) True G78023

Expression Profile