RNA id: XM_022673191.1


Basic Information

Item Value
RNA id XM_022673191.1
length 2628
RNA type mRNA
GC content 0.47
exon number 5
gene id supt7l
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33820065 ~ 33829743 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTGTACCCATAGGACGCTGAGAGATGTATTATTTTTGagtgtaaatgttttttaaacctCCTGGTTTTCAGTCTTTCTGCTGTAAGCAAGGGTAAGAATACATCCAGAAAGGATGATGCGCTACTGGGGTGAACTCCCAGTTGCATCCGCCCCTCCAGGCCGGAGCTCCTTTGACCTTTTACAAAGAGAATTTCGCCAAGTAGAGATGCAAGACCCTCCGCTGCACCAGCCATCAGCACAGCGGCCGCGGCCCACCACCATGCTGGACATCCCCTCAGAGCCCTGCAGCCTCACCATCCACACAGTGCAGCTCAGCCAGCACGCCCGGCGCCTCCGCAGCCTCCTCACCGCAGCACAGCTTGGCCAGCAGCCTCTGGCAGCTTTATCAGACGCGCAGGGCCTGCTGAGACCAGAGGACGGGGATTCACTGCCCCCACGGCCGGTTACTCCAGCAGTACCTGACGATCTCTTGCCTCTGGACAGTAAAGCTCCCTGTGAACCCTTCCAGCTCCGGCACAGCGACCCAGAGAGCCACTTCTACAAAGGTGAAGGGGAGCCGGTGACGGAGTTGAGCTGGCCCTCCTGCCGTCAGCTCCTCTACCAGTCGGTTGCTACAGTCTTGGCTCACGCTGGCTTTGAGTCTGCGAACGAGAGCGTGCTGGAGACCCTGACTGACCTGGTTCATGAGCACTACCTGCGGCTGACCCGGCTCCTCCGGGTGGCGGTGGACCGCGAGGCTCGTCTCGGCTCGACCGCCTTCCCCGACGTGGTGGAGCAGGTCTTTCATGAGGTGGGCATTGGAAGCGTGCTTGCCCTGCAGCGCTTCTGGCAAGTCCGCATCAAAGACTACCACAGCTACATGCTGCAGGTCAGTAAGGAACTTTCAGAGGAGTATGAGAGGTTGGTAAACCCTGAGAAGGCTCTGGAAGACTCCAAACCACTGAAGGTTAAAGAAGAACCTGTGAGTGACATAGCCTTCCCTCTGAGTGAAGAGCCGGAGGCAGACCTGGCCTCGGGTGACCAGGCCCTGCCCATCGGAGTGCTGGGTACATCCAGTGAAAGACTTACTGGAGGTCTGGAGGAGGGACACTCCCCTCACACCTCAGCTCCAGCAGGAAACAACTCCCCCTTGTGGCAGCTGTCACAGGTAAAGATGGAGCCTCAGGACAATGAGGAGGGCCAGGTGTCGGGTCACGGCGTTCTCGGTGGGGATGTGTTTGAGGAAGGTCCCATGTCCACCATGAGTGAAGCGGGCATGGCTCCGTCCCCCGGCGGCTCGGACGGCAGCTACGGCTCGCACTCGCCGGACTCGCTGATGGGCACCTCGCCTTTCAACCAGAGGCCCAAGAAACGAATGAGGAAAGTGTGAGCCTTTGTGGAGGGACTAATGGAGTGTCTGGTCTGTTTGTGATGAGCATTTCCTTTTGTGATGTTTTGCGTTTGGTCCAGCAGACAATGGAttatgtgtgtggatgtgtgtgtgtgtgcgtgagattGTGGTTAAATGAGAGTAATCTCTAGCGAGCGGCTGCTGGTCACTGTTTTACCCACTTACTGTGTTGGCCAATTACTTGTTTGGCATGGTAAAATTAGCATCTGTTAATTGTAATGGAACGATCCAGGAATCACAACATTGGGAGTAATTATAGCCTGACGTCTGCTTCAAAACACACAGGGACATCAATCAGGGGATAATGGCAAATTAATTACAGCTTGCATAATTCTGCATATTAAGGCAGCAAGGCTTTTTGGTACCTGTTAGCATATTTCCAGTTTGTCACAGTGGATGCAGACTATTGTTTCCAAGCCACCtgcctaaaaaaaattaaacaccaCGGAGACTGAATGAGAATGTCAATACCTCTTTCCAGCCTTCCCAATTATACCAGCAACATGTGGTACCATGCAATTTTCCAATTAATCTGATATTAACTTTTGACTGCGACTCATAAAGAGCTCATAAAACTTGTAAAACTTGTGTAAACATTTCTGCTATCTTATTTTATCAGCTTGGCATGTTGTATATATTGGGGATGCACTGAATACttgctaaattaaattatttggcTGAAAATAGACAAtataaaagagaataaattaaaattgcATCCATCTGGCATTGTAAAAATGTCCtatgttcaataaatatttctaaattgtagttttgtaattgcttttctATGAAAGACAAGACTAAATGAATTTACTCTATTTGATTTAtgcaatggtgaaaaaaaaagctttgttaggtctttagccaaatgtttcattttgtttgattttggccaaacatgtttattttgtgcatCCCCAATATGTAAGCTGAGCTAATGCTCCTGTCAATAAAAGAGCCAGAGAGCTTATTTACGTCAGAACAGTCTCTGTTTGTATGATATCAGGCTAAAGTCTAAAGTCCATCATCAAGAACCAGAACCAAAAAGAGAATGAAAATTCAATAGCAAGAAAGTAATGTTTGCTAGTTTGTTTATATAGCGATGCTTTATGTATCTAGACTTATTTTGTATAAGTACATATTGTTTGTTACATTTATGTGTAGTGGGTCTATTTGTGAAGTTAATTTTTGTATGTAAATTTTATTTTCTAGagtaaaaaagactttcacaAA

Function

GO: NA

KEGG:

id description
K11316 SUPT7L; STAGA complex 65 subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650287.1 lncRNA downstream 16544 33765923 ~ 33803521 (-) True LOC111193147
XR_002650286.1 lncRNA downstream 16544 33775203 ~ 33803521 (-) False LOC111193147
TU115215 lncRNA downstream 183492 33636239 ~ 33636573 (-) True G85561
TU115196 lncRNA downstream 327044 33492460 ~ 33493021 (-) True G85542
TU115176 lncRNA downstream 509972 33247051 ~ 33310093 (-) True G85528
TU115289 lncRNA upstream 18817 33848560 ~ 33849769 (-) True G85617
TU115333 lncRNA upstream 376486 34206229 ~ 34206807 (-) True G85654
TU115339 lncRNA upstream 393162 34222905 ~ 34226742 (-) True G85659
TU115343 lncRNA upstream 401148 34230891 ~ 34231119 (-) True G85660
TU115381 lncRNA upstream 437713 34267456 ~ 34331347 (-) True G85687
XM_022673189.1 mRNA downstream 344376 33201802 ~ 33475689 (-) True LOC103041514
XM_022673188.1 mRNA downstream 788676 32938106 ~ 33031389 (-) True clip4
XM_022672505.1 mRNA downstream 1328245 32488454 ~ 32491820 (-) True LOC111193156
XM_022672504.1 mRNA downstream 1336232 32442573 ~ 32483833 (-) True LOC111193155
XM_007230956.3 mRNA downstream 1418896 32394659 ~ 32401169 (-) True LOC103036987
XM_022673192.1 mRNA upstream 27556 33857299 ~ 33910007 (-) True LOC103040637
XM_022673195.1 mRNA upstream 125452 33955195 ~ 34012557 (-) True rbks
XM_022673196.1 mRNA upstream 125452 33955195 ~ 34008651 (-) False rbks
XM_022673201.1 mRNA upstream 444773 34274516 ~ 34471605 (-) False daam2
XM_022673199.1 mRNA upstream 444773 34274516 ~ 34471605 (-) False daam2
TU115204 other downstream 301394 33509680 ~ 33518671 (-) True G85550
TU115139 other downstream 708331 33111474 ~ 33111734 (-) True G85501
TU115036 other downstream 1328536 32452714 ~ 32491529 (-) False LOC111193156
TU115033 other downstream 1328536 32489681 ~ 32491529 (-) False LOC111193156
TU115044 other downstream 1330473 32449631 ~ 32489592 (-) False LOC111193156
TU115290 other upstream 4269 33834012 ~ 33839629 (-) True G85618
XR_002650288.1 other upstream 108717 33938460 ~ 33938701 (-) True LOC111193148
XR_002650389.1 other upstream 125646 33955389 ~ 34012562 (-) False rbks
TU115663 other upstream 1458489 35288232 ~ 35295034 (-) True G85902
XR_001518670.2 other upstream 2761890 36591633 ~ 37101581 (-) False nrxn3

Expression Profile