RNA id: TU19656


Basic Information

Item Value
RNA id TU19656
length 260
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G14647
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30281776 ~ 30338926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttatgattactgatgatcagtgatggtttgtagagacatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcatttcatgcttcttccctctgctactgacaactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19651 lncRNA upstream 2188 30278817 ~ 30279588 (+) True G14642
TU19644 lncRNA upstream 13394 30260677 ~ 30268382 (+) False G14638
TU19645 lncRNA upstream 15815 30260677 ~ 30265961 (+) True G14638
TU19632 lncRNA upstream 47625 30222567 ~ 30234151 (+) True G14629
TU19628 lncRNA upstream 207301 30073999 ~ 30074475 (+) True G14625
TU19707 lncRNA downstream 91135 30430061 ~ 30496599 (+) True G14695
TU19716 lncRNA downstream 180291 30519217 ~ 30544734 (+) True G14699
TU19713 lncRNA downstream 299388 30638314 ~ 30666460 (+) True G14697
TU19753 lncRNA downstream 365436 30704362 ~ 30704623 (+) True G14731
TU19758 lncRNA downstream 400118 30739044 ~ 30772153 (+) False LOC103032125
XM_007245583.3 mRNA upstream 3337 30269188 ~ 30278439 (+) True c2h17orf75
XM_022676094.1 mRNA upstream 62643 30105857 ~ 30219133 (+) True LOC103042681
XM_007245579.3 mRNA upstream 339517 29913242 ~ 29942259 (+) True rab40c
XM_015604883.2 mRNA upstream 373990 29895552 ~ 29907786 (+) False pigq
XM_022678003.1 mRNA downstream 60494 30399420 ~ 30407723 (+) True LOC111194304
XM_022676106.1 mRNA downstream 138861 30477787 ~ 30663029 (+) True LOC103043304
XM_022676117.1 mRNA downstream 139161 30478087 ~ 30663029 (+) False LOC103043304
XM_022676122.1 mRNA downstream 230860 30569786 ~ 30572341 (+) True LOC111193882
XM_022676134.1 mRNA downstream 408748 30747674 ~ 30772114 (+) True LOC103032125
TU19643 other upstream 13394 30260677 ~ 30268382 (+) False G14638
TU19455 other upstream 539053 29733305 ~ 29742723 (+) True G14505
TU19448 other upstream 592627 29674174 ~ 29689149 (+) False nubp1
TU19421 other upstream 883610 29395160 ~ 29398166 (+) True G14480
TU19373 other upstream 1152403 29129067 ~ 29129373 (+) True G14444
XR_002650771.1 other downstream 408750 30747676 ~ 30772114 (+) False LOC103032125
TU20118 other downstream 1702136 32041062 ~ 32045058 (+) False smim13
TU20119 other downstream 1702136 32041062 ~ 32045058 (+) False smim13
TU20126 other downstream 1835475 32174401 ~ 32178598 (+) True G14985
TU20389 other downstream 2582098 32921024 ~ 32924785 (+) True G15160

Expression Profile