RNA id: TU19707


Basic Information

Item Value
RNA id TU19707
length 297
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G14695
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30430061 ~ 30496599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagtttagttttcccacaaaatcttacagcacttcatgcttccctctgctactgacaactttttttggagatgcagatttccttttccagcaggacttggcacactgcccacactgccaaaagtaccaatcggtcttatataatattgaaatttctgagaaactgattttgggttttcattgtctgtaagccataatcaacaataaaagaaataaacgcttaaatctatataatgagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19656 lncRNA upstream 91135 30281776 ~ 30338926 (+) True G14647
TU19651 lncRNA upstream 150473 30278817 ~ 30279588 (+) True G14642
TU19644 lncRNA upstream 161679 30260677 ~ 30268382 (+) False G14638
TU19645 lncRNA upstream 164100 30260677 ~ 30265961 (+) True G14638
TU19632 lncRNA upstream 195910 30222567 ~ 30234151 (+) True G14629
TU19716 lncRNA downstream 22618 30519217 ~ 30544734 (+) True G14699
TU19713 lncRNA downstream 141715 30638314 ~ 30666460 (+) True G14697
TU19753 lncRNA downstream 207763 30704362 ~ 30704623 (+) True G14731
TU19758 lncRNA downstream 242445 30739044 ~ 30772153 (+) False LOC103032125
TU19762 lncRNA downstream 255245 30751844 ~ 30752714 (+) True G14737
XM_022678003.1 mRNA upstream 22338 30399420 ~ 30407723 (+) True LOC111194304
XM_007245583.3 mRNA upstream 151622 30269188 ~ 30278439 (+) True c2h17orf75
XM_022676094.1 mRNA upstream 210928 30105857 ~ 30219133 (+) True LOC103042681
XM_007245579.3 mRNA upstream 487802 29913242 ~ 29942259 (+) True rab40c
XM_015604883.2 mRNA upstream 522275 29895552 ~ 29907786 (+) False pigq
XM_022676122.1 mRNA downstream 73187 30569786 ~ 30572341 (+) True LOC111193882
XM_022676134.1 mRNA downstream 251075 30747674 ~ 30772114 (+) True LOC103032125
XM_022676139.1 mRNA downstream 251076 30747675 ~ 30772114 (+) False LOC103032125
XM_007245585.3 mRNA downstream 263922 30760521 ~ 30772114 (+) False LOC103032125
XM_022676151.1 mRNA downstream 322372 30818971 ~ 30864806 (+) True LOC103032439
TU19643 other upstream 161679 30260677 ~ 30268382 (+) False G14638
TU19455 other upstream 687338 29733305 ~ 29742723 (+) True G14505
TU19448 other upstream 740912 29674174 ~ 29689149 (+) False nubp1
TU19421 other upstream 1031895 29395160 ~ 29398166 (+) True G14480
TU19373 other upstream 1300688 29129067 ~ 29129373 (+) True G14444
XR_002650771.1 other downstream 251077 30747676 ~ 30772114 (+) False LOC103032125
TU20118 other downstream 1544463 32041062 ~ 32045058 (+) False smim13
TU20119 other downstream 1544463 32041062 ~ 32045058 (+) False smim13
TU20126 other downstream 1677802 32174401 ~ 32178598 (+) True G14985
TU20389 other downstream 2424425 32921024 ~ 32924785 (+) True G15160

Expression Profile