RNA id: TU281595


Basic Information

Item Value
RNA id TU281595
length 3060
lncRNA type intronic
GC content 0.39
exon number 2
gene id G207531
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 23095821 ~ 23098906 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATAGTGAACAATGACTTGTCTATGTTAAATTATAATCACTGTTTAGACTAGTTAGTTTATTCAGTGGTGGGAAAATTAATGGCAAAATTAATGGAAAcctgccaatattacacattatagcacggaccttgagtgtattattattttaccacagttccattatcacagTTTATTCAAAGATTTATAGTTaaagaagatgagaaaataggatctgtttggttataaacactccacaagttaaaatagttccattgctgctctgtttgtagctgtgctgtttggcttgtaagcgctgcatcattgctaggttataggttacctgtatgtggcggagtaagacatgtagagcttcagttacagtgcattaccggctgataacggcactcagaGAACGTCTctgagccaatcacattgcagggtcagaattaactgttgtataataataaataatacatattaacaataaaacagcGTGAACAGAATTTCCTCGGAACagaatgtgagtgtgtgcgcaGCTAATTGAAACATCACCAGCCTGATCTGACAGCACTTGTCTGGAGCTTTGGAATTCTAGTCATCCACATTTCTGACCTCCTGCATCCACCACCCCCCCTGGGGAGTCGCCCTTCAGGGAGTCTGGCAGACTCTCAGCGCAGGGACATCAAACAGTGTCCTAAAGTGAGTTCCATAAAACCTCTGAGTGAAACATTCGACCTCAGCTTAGGTGGCCACTAAACAAACATCTCCCACAAAGAGTGTGCTTTCTGAAGACCACTGCAGGCCTGGGCTGTGTTCATGACCCCACCACAAGCCTGTATCTGAAGAATTGCAGCTATAAAGAACATATAAAGAACTGTATAACTTTCTTGAGACAAAGACTTGGGGCCCTATTTTGGTGATTTATTGCAGATCACACAGTTTGATTTAGCctaaaacgtgcaaaaggcataaactaaattctcttaattaatcgtgggtgtgttttgggcatatcATGAAATAAACCACTCAGTGTGTCAgatgtcattccctttaagagtcaggtgactttggcgcgttccgATCTTAACAGTGCGTCGCTTTTCAGCGTCTCAAGAGAGGATACTgatctgctcgttcacactgtgaagatactccagcagctcatttaatggaactacaatgttattttattcttttgcactcctgcatggctaagataagAATGGACTCTGActcttgactgttgtcagggtttaaatcagtcagtggcacacacctgtatttcccgcagacaagataaaaacacagacttccagaccaccacacccatcagtgtagatatatttctaaaccctgatgctattttaacagtgggTGTAGCAAGATAGCAGCAACAAGCATGttcaccttgtgcagggtgtatgataggtcCTATTGCCTTTTTATGATGTTtattctacttttcttttttatacaaCAGAAATTCGCTTAATTGTGTTGTagtatttagtttgttttaagaaaatgtatctcaatgtttttttgagcaaataaacacattaataatgTAGCATCAGCTCATAGCCTCATTTAGCACTTTCTTAAAAATGGCAAATCCACCAGCAGAGCCCTTATCCACCCTGTACCCCAACTCCAAGAGGTTGAATTGAACTATATATTCTACCATTCAATATATACAGAACCACAGAGAAAGCTTGAGTTTCAGCTACTATGGCCAACATGGACATGCCACATACtctctaaatataaaatatacttatataagcatataaaatatatttgtaagtaagTTTAAAGTATATTTGGCCGTGATTTGAGATTAATTTCTTTTAGGTCGGGAGTTCCAGCTAATTACAGTAGCTTACGTATCAATTTAGTTATACCACCCACTTTTGTTCAGTtgttatattcatttttatatgaTAGATAGTTTACCTTATTCAGTTTTATGATATTGAGATAGATCTCAGACCCATAGGCCTCTGACTGAAGTGCAGGTCAAACTGATGATCAAACAAACCGTGTTCCACTCTGTTCCAGTGACTCAAACACCCCAGTGTACTTAAATAACAGTGTTTCTGAAATAACCCCCTATTCACAAGCATTCTCGTGCTGAAAGACTGATGCGGTGTGATAAGGGAGGCGGAAATTGCAGGATGCACAAAAGCGTGTGTGACAGACAGCGGTGCACGAGCACTGATCCCACTAACACATACAGTAATAACCAGACAGGGGGTTCAGCACAGAtgaagagaccacttcagtttctgaatcagtttatctgattttgctatttataggtttatatttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatatattgagtcatttagagcatttatttgcagaaaattagaaatggctgaaataacaaaaaagatgcagagcttttagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttaatcacagtttctttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaaatcaagttcAAATTCACTCTGTGTAATGTATGCTGTACACTTATGAAAATATGGGGGGAAAGACTGCtcatataattacattatataaaaaatggtTATCAGGGCACcctgattattttaataaatttccTTTAagatcattggttgttcggatcagttatttcagttaaatacagctctggaataaataaGCATGCACCATCGCTTTGGAGTAAATACCAGTAACAATTACTGCCCGTTTTGAGCTCGGCATTTTGTAATGGTGTTAACCTCAGAGGTCAGGCGTTCTGGGCCGTAAATCTGTAGCATCTATAGAGCAGCCGTATACAATCCCGGCGCCGTGGTAACCAAACCCCCCTCGCATGTGTTGCATCAACAAACACCATCCCCACATGCAGCAGCTGcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281600 lncRNA downstream 43754 23051066 ~ 23052067 (-) True G207536
TU281570 lncRNA downstream 232804 22763398 ~ 22863017 (-) False G207514
TU281572 lncRNA downstream 232804 22856643 ~ 22863017 (-) True G207514
TU281573 lncRNA downstream 232804 22860643 ~ 22863017 (-) False G207514
TU281566 lncRNA downstream 349994 22743938 ~ 22745827 (-) True G207511
TU281688 lncRNA upstream 121563 23220469 ~ 23308410 (-) False LOC103033401
TU281692 lncRNA upstream 142838 23241744 ~ 23243273 (-) True G207552
TU281691 lncRNA upstream 148627 23247533 ~ 23290028 (-) True G207551
TU281701 lncRNA upstream 429529 23528435 ~ 23529136 (-) True G207557
TU281755 lncRNA upstream 804008 23902914 ~ 23903144 (-) True G207604
XM_022683817.1 mRNA downstream 42561 23052373 ~ 23053260 (-) True rep15
XM_007228333.3 mRNA downstream 82641 22977553 ~ 23013180 (-) True LOC103023170
XM_007228332.3 mRNA downstream 82641 22977553 ~ 23013180 (-) False LOC103023170
XM_022683803.1 mRNA downstream 139797 22906047 ~ 22956024 (-) False LOC103035944
XM_007228458.3 mRNA upstream 63040 23161946 ~ 23167486 (-) True olfml1
XM_022683818.1 mRNA upstream 103112 23202018 ~ 23261354 (-) True syt9
XM_022683819.1 mRNA upstream 191545 23290451 ~ 23412954 (-) True LOC103033401
XM_022683826.1 mRNA upstream 407102 23506008 ~ 23602345 (-) False LOC103047696
XM_022683825.1 mRNA upstream 407102 23506008 ~ 23602345 (-) False LOC103047696
XR_002651782.1 other downstream 139797 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other downstream 139797 22910673 ~ 22956024 (-) False LOC103035944
TU280694 other downstream 2583677 20463703 ~ 20512144 (-) False LOC103040850
XR_002651783.1 other upstream 125699 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 840019 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 857440 23956346 ~ 24020314 (-) False dnajc24
XR_452613.3 other upstream 884443 23983349 ~ 24020314 (-) False dnajc24
XR_452611.3 other upstream 884443 23983349 ~ 24020314 (-) True dnajc24

Expression Profile