RNA id: XR_002651784.1



Basic Information


Item Value
RNA id XR_002651784.1
length 706
RNA type misc_RNA
GC content 0.53
exon number 6
gene id dnajc24
representative False

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 23938925 ~ 24020314 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AATGATCCGGCGCCGGGTTCCTCCGGGCGGAAACAGCGCTGTGAGCAGCATGGCTGAGACTAGCAGTGAgtctgagagatagagagagaggctgtGAGATGCTGTGAGATGAGGATTATGGCCAATCTCCAAAAAAACTGGTACTCCATACTTGGTGCGGCCCAAACTGATGATTTACAAGAGCTCAAACGGAAGTACCAGAGACTGGTCCTTGAGCTTCATCCAGACAAGCAGAAGTCTGACCTATCagaggaggaggcggagctgCACCTGCAGAGGTTCATAGATGTGGATCAGGCCTGGAAGGTGTTGAGCAATGAGGAGAGCAGGAaggcgtttgacctgcagctgCGTGcACAAGAACTGAAGCAAAGCTGGCCAGTTGATGCCTGTATTAAACTTGAGGACATGGACTGGGACAGTGAGAATGAGTGTTACTCCTACAGCTGCCGCTGTGGTGGGGAGTTTCACCTGGAGAAGGACGAGGCGGAGGAGGAAGAAGACTCAGTGGTGTGCTGCGATACGTGCTCTCTCAGTATTGAAGTGAAGAGCTGTAGATGATGTCTTCTGTCTACGCTCTTCTCTCTACTCTCTTCTGTCTACAAATATAAAGATCTGACCAGAACAGCACAGCACCATATTCCCCTCTGAGAGGCCGTCACACACCCATCAGCCTCCCGGGGAGAGGGGGCAGACCCAGCAACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU281755 lncRNA downstream 53202 23902914 ~ 23903144 (-) True G207604
TU281701 lncRNA downstream 427210 23528435 ~ 23529136 (-) True G207557
TU281688 lncRNA downstream 647936 23220469 ~ 23308410 (-) False LOC103033401
TU281799 lncRNA upstream 177147 24197461 ~ 24200432 (-) True G207639
TU281861 lncRNA upstream 422962 24443276 ~ 24496664 (-) True G207692
TU281864 lncRNA upstream 425952 24446266 ~ 24450538 (-) True G207693
TU281881 lncRNA upstream 485835 24506149 ~ 24507943 (-) True G207702
TU281885 lncRNA upstream 497149 24517463 ~ 24520749 (-) True G207705
XM_007228321.3 mRNA downstream 290466 23657234 ~ 23665880 (-) True tcp11l1
XM_007228322.3 mRNA downstream 290469 23657234 ~ 23665877 (-) False tcp11l1
XM_007228324.3 mRNA downstream 301243 23612063 ~ 23655103 (-) False LOC103046977
XM_022683834.1 mRNA upstream 151975 24172289 ~ 24213659 (-) True mpped2
XM_022683835.1 mRNA upstream 151975 24172289 ~ 24209793 (-) False mpped2
XM_015601505.2 mRNA upstream 390514 24410828 ~ 24416431 (-) True LOC103032449
XM_022683846.1 mRNA upstream 487923 24508237 ~ 24514730 (-) False ciapin1
XM_022683845.1 mRNA upstream 487923 24508237 ~ 24514700 (-) True ciapin1
XR_002651783.1 other downstream 731291 23224605 ~ 23225055 (-) True LOC111195748
XR_002651782.1 other downstream 1000322 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other downstream 1000322 22910673 ~ 22956024 (-) False LOC103035944
TU280695 other downstream 3444202 20463703 ~ 20512144 (-) False LOC103040850
TU281888 other upstream 504420 24524734 ~ 24529067 (-) True G207707
TU281979 other upstream 927817 24948131 ~ 24948851 (-) True G207772
TU282177 other upstream 1296688 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 1628310 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 1635663 25655977 ~ 25708310 (-) False G207940

Expression Profile