RNA id: XM_022683835.1


Basic Information

Item Value
RNA id XM_022683835.1
length 2181
RNA type mRNA
GC content 0.42
exon number 7
gene id mpped2
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24172289 ~ 24213659 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGCCCCAGCCAGCGGAGCCATGGCACGCAAAGGCTCCTCCCAGGGGAAGGTGACCATCTCTGTGGATGAGTACAGCTCCAATCCCACCCAGGCCTTCACACACTACAACATCAACCAGAGCCGCTTCCAGCCCCCCACTGTGGAACTGGTGGAACCCATTCCTTACGATGCTCCTAAGCCAGCGGGTCACACACGTTTTGTCTGCGTCTCGGATACACACTCCAGAACAGATGGCATCCACATGCCGTACGGTGACGTCCTGCTCCACACGGGTGACTTCACCGAGCTGGGGCTGCCGTCTGAGGTGAAGAAATTTAACGACTGGTTAGGCTCTCTCCCCTACGAATACAAAGTGGTCATTGCTGGGAACCACGAGCTGACGTTCGATAAGGACTTCATGTCTGAACTGGTCAAGCAGGACTACTATCGCTTCCCCTCCGTGTCCAAGCTGCAGCCCGAGGACTTTGATAATGTTCAGTCACTCCTTACGAACTGCATCTACCTGCAGGACTCCGAGGTCATGGTCAAAGGATTCAGGATATACGGGACCCcgtgGACGCCCTGGTTTAATGGATGGGGTTTTAACTTGCCTCGTGGTCAGTCTCTGCTAGACAAGTGGAACCAGATCCCTGAGGACATAGACATCCTTATGACCCACGGGCCTCCTTTGGGGTTCAGAGACTGGGTACCCAAGGAGCTCCAGAGAGTCGGCTGTGTGGAGCTGCTCAACACGGTACAGAGGCGGGTCCGACCCAAGCTCCACGTCTACGGGGGGATTCATGAAGggTATGGTTTAATGACAGATGGGTATACGACATTCATCAACTCCTCGACGTGTACAGTCAGTTTCCAGCCTACAAACCCGCCAATCGTATTCGACCTTCCCAACCCCGGAAGCTCTTGAAATTCCCCTGGAATTTGCCACTTTTTTTCTACTTTACAACTCTTCTTAACTTTAAAGTAATGGTCCTTTTGTACtgcctgtatttaataaaaaaaacaatgaatgcatgaatatgtaatatttttaaagatttaagatCATGCCATTTGAATAATGATTtgctggaaaaggaaaaaaaatgtgaattcaTATTTATGGTTCATTTTTGTATTGGTTGCCTTGTTAAACTCCTTTTAGCCTGTATATGAAAGTGCATTATAAAGGTACCCTGAATGGCCCAGCAATACTTGACTGTTTCTGTACTTCGCTGTGCATTCTGCTTAATAAACCCAGCGCAGGATCAGTTATTTAAAGCTGTAGTTTCGGTCCTGTGCAGTTTTAGAGCTGGAaccagtgtgattttttttttttttatttgaggatTTGCATAGCTGAAATCTCTCAACGCCCAAGTCTCTACAtgggtgaatatatatatttattgtgcaATTAAACACATTGCTTTtattatgtcaaaataatgCATCTTGTTTATAAAGCAAGCATTGCAGCACCCTCTAAAGTGTTTATTCCCACTGTACATGTGGAGGACAAATTGATTAAGTGACAAGGTACTTTATGAGTGATTTAGGGTTATGGACTTGTTTGAATGGAGCAGTTTCTGTTGCCATTTTATTTCTGTGGTGCTTGTAGTGTGTCATAGCAGTGCAGTGGGTGTGGCATTTTCATTCCAGTCAGACATCCAGTGAGATTAGACTtcagtgataaaaaataaaggtgctacaaactGGTTCTAATAGAAGAATTGCTTTTAGTCTTTTATTGAAGTTTGATTCTTATAATTAACTCATCTCTTAAAAACAAATCATTCTGTATAGAaccagaaattattattattatattgcatCACTCAGAGTACCATTTGTAGTACCTGTATTTTAAAGAGTGAGGAACACAGCGATTTTCTACCAAGCTCCAACTCAATGTGTTAATTTGACAATTTTAAGTTGAAGGAGATGAAGCAGTTATGTAGATATGATTTAATTTCCCTGAATCCAATTTGGTGGACTTTTACTTTGGGTCATAATTAATGTGTTTGTTGTATTTTGCACTGTTTGGAGCTGCAATCTTGCTAGCgcacacagaaaaaaagctaTTAAATTGCCATGAGATCATTGGTGCCATTGTAAATGCTTTGTTTCCATGTCattgactttttttattcattgtgtCATTTAGCCAActttatatgcaaataaaaccaCAAGATTTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281753 lncRNA downstream 185310 23986094 ~ 23986979 (-) False dnajc24
TU281774 lncRNA downstream 191938 23979709 ~ 23980351 (-) True G207623
TU281769 lncRNA downstream 198725 23973284 ~ 23973564 (-) True G207618
TU281768 lncRNA downstream 199500 23971795 ~ 23972789 (-) True G207617
TU281767 lncRNA downstream 201342 23970317 ~ 23970947 (-) True G207616
TU281861 lncRNA upstream 233483 24443276 ~ 24496664 (-) True G207692
TU281864 lncRNA upstream 236473 24446266 ~ 24450538 (-) True G207693
TU281881 lncRNA upstream 296356 24506149 ~ 24507943 (-) True G207702
TU281885 lncRNA upstream 307670 24517463 ~ 24520749 (-) True G207705
TU281887 lncRNA upstream 320932 24530725 ~ 24577606 (-) True G207706
XM_007228311.3 mRNA downstream 151976 23986580 ~ 24020313 (-) False dnajc24
XM_007228321.3 mRNA downstream 506409 23657234 ~ 23665880 (-) True tcp11l1
XM_007228322.3 mRNA downstream 506412 23657234 ~ 23665877 (-) False tcp11l1
XM_015601588.2 mRNA downstream 517187 23612063 ~ 23655102 (-) False LOC103046977
XM_015601505.2 mRNA upstream 201035 24410828 ~ 24416431 (-) True LOC103032449
XM_022683846.1 mRNA upstream 298444 24508237 ~ 24514730 (-) False ciapin1
XM_022683845.1 mRNA upstream 298444 24508237 ~ 24514700 (-) True ciapin1
XM_022683850.1 mRNA upstream 322855 24532648 ~ 24746996 (-) False LOC103031505
XM_022683851.1 mRNA upstream 322855 24532648 ~ 24746996 (-) True LOC103031505
XR_452612.3 other downstream 151975 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other downstream 151975 23956346 ~ 24020314 (-) False dnajc24
XR_452613.3 other downstream 151975 23983349 ~ 24020314 (-) False dnajc24
XR_452611.3 other downstream 151975 23983349 ~ 24020314 (-) True dnajc24
XR_002651783.1 other downstream 947234 23224605 ~ 23225055 (-) True LOC111195748
TU281888 other upstream 314941 24524734 ~ 24529067 (-) True G207707
TU281979 other upstream 738338 24948131 ~ 24948851 (-) True G207772
TU282177 other upstream 1107209 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 1438831 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 1446184 25655977 ~ 25708310 (-) False G207940

Expression Profile