RNA id: XM_022683851.1


Basic Information

Item Value
RNA id XM_022683851.1
length 9237
RNA type mRNA
GC content 0.50
exon number 27
gene id LOC103031505
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24532648 ~ 24746996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catcctcctcctgctgctgctgctgctgctgttctgtgGACTGTGCTGCAGGTTGTGGAGCTGCTGGGTCAGAGGGATGTGGATCTGCAGGCTGTAGAAGTGTCTCTTGGTTGGTGTAGGAGGTGTAGGTTTGGAGTAACCTTCACACATACAAGAAATGGATCCTGCTGCAAGGTGTAAAGGAGGCTTTTCGGTAAAGTTCCCTCACTGACATCCCGTCCTCCCGTCGCCTCTGCCCTGCTCACGTCGCATGTGGCATTTGGAATATCAGGATTGATACACCAGTGCTTAAAATGCCTCGAAGTCTGATGTCCAGCGAGGAGGAGATGGCTCAGAGTTTCTCTGACTCTGGCAGCTCAGAGTCGGAGAGTTCGCGAGACGAACGTCCCTGTGTGGAGCGACCCACCAGCGGCCGGCTGGGCAACAGCCAGACAGACTCTATTCTCATCTGTGTGGTTATCCCTGATCTGCAGCAGTCTAAATCCATGAGGTTTAAGCCTGACGCCACGGTCTGGGCGGCCAAGCAGCAGATCCTGTGCACACTCACCCAGAGTCTGAGGGATGTACTGAACTACGGGCTGTTCCAGCCGGCCGTGGACGGCAGAGAGAGCTGCTTTCTGGAGGAGGAGAGACCGCTGAGGGATTACTCCCTGCCCACCAATAAGGGTGTTCCCACTCTGGAGTTTCGCTACAAGAGCAGGGTGTACCAGCACGCAAACGTCAATGAAAAACAGATTGAAAAGCTTCACACGCAGGCCAACCTGAGGAAGTTTATGGAacacattcaacaccatcaGGTGGATAAAGTGTCTAAGTTGCTGGAGAGAGGCCTTGACCCGAACTACCATGACCCGGACACTGGGGAGACCCCCCTGACCCTGGCAGCCCATCTGGATAACGTGGTGGAGATCATAACGGTGCTGAAGAACAGAGGAGCCCATTTAGATTTCCGCTCTCGAGATGGGATGACGCCGCTCCATAAAGCTGTCAGGGCCAAGAACCAAATCGCTCTTAAGgccATGCTGGAGCTGGGAGCCTCTCCTGACTACAAGGACCGGCAGGGTCTGACTCCTCTGTACCACACAGTGACGGTGGGGGGTGACCCCAGCTGCTGTGAGGTGCTCCTGCGCGCTCACGCCACGGTGGCCTGCCACGACGAGAACGGCTGGCACGAAGTCCACCAGGCTTGTCGATATGGACACGTCCAGCATCTGGAGCACCTCCTGTTTTATGGCGCGGACATGCGGGTGCAGAACGCCTCTGGGAACACCGCCCTCCATATCTGTGCTCTCTACAAACAGGAGAATTGTGCCAGAGTCTTGCTGGTGCGGGGAGCCAGCAAGGACGTGAAGAACCACCGCGGGCAAACTCCCTTCCAGGTGGCCATAATTGCAGGGAACTTTGAGCTGGCAGAGTTCATAAAGAACCACAAAGACACTGATATTGTGCCTTTCCGGGAGGCTCCAGCGGTGTGTTCGGGCAGGggccggcagcagcagcagccacagACGGGCAGGAGTACTCTGACTGCTCCACGGGTGCTCCTGCGCTCCAACAGCGACAACAACCTGAACGTAAATAAGCTGCCTGCGCCACGCTCGCCCTCACGCTCACCCTCGCCCCTGCGCAGCCTGTCGCCCCGCAGGCCCCAGCAGATGCAGAACAGCCCCAATGGCACGGTGAAGACCATGGGCCGGGGGAGCCGCCCCCCGCGCAGCCGCTCGCCCTCCCTGGGCCGGCTGGGGGAGGGCGACGCCCGGAGACAACACACCCCCCAGCGCCACAGCAGTCCACGCCCCACACGGGATGGCTTCTCCGGTGCAGAAACCCCAGGGTCCAAACGCAAGCTGTACAGTGCTGTTCCCGGCAGACACTACGTGGTGGTGAAGTCCTACCAGCCACAGGCAGAGGGTGAAATCACCTTATACAAGAACGACAGGGTCAAAGTGCTCAGTGTTGGTGAAGGAGGATTCTGGGAGGGCAGCGCTCGGGGGAATGTGGGGTGGTTCCCGGcagagtgtgtggaggagatccCCAAGAAGAGCAATGAAGACCGACCCTATGCCAGGGCGGACCGATCTGAACGGCGGAAGCTCTTTCGACATTACACCGTGGGATCGTATGACAGCTTTGATGCATCCAGTGACTGCGTGATCGACGAGAAGACGGTGGTGCTGCAGAAGAAGGACAATGAGGGCTTCGGCTTCGTGCTGCGAGGGGCCAAAGCGGACACCCCGATTGAGGAGTTTACACCCACCCCGGCCTTCCCCGCCCTGCAGTATCTGGAATCTGTGGATGAGGGAGGAGTGGCCTGGCAGGCTGGACTGCGGACCGGAGACTTCCTTATCGAGGTTAACCAGGACAACGTGGTCAAGGTGGGCCACAAACAGGTGGTTAACATGATCCGACACGGGGGCAATCATCTGATCATCAAAGTGGTGACGGTCAGCAGGAATCTGGACCCTGATGATAAGTCTCGAAAGAAAGCTCCTCCACCACCCAGGAGAGCTCCCTCCACCGCTCTCTCCACACGCTCCAAATCCATGACCTCAGAACTGGAAGACCTAGTGGATAAAGCCACTTTGAGGAAAAAGAAGGATGATCAGCTTTCAGATATTGCGGCTCTGAAGAAGAGGATTGTTTTTCAAGTCACCCTAAATAAAGTGGAGGAGGTTGTACCTCCCCAGAAGCCCGTGTGGGACAGCTCGAACGTGGACGTGAGGGTGGCGGCTGTTAAACCGCGGCCTACCAGCAGGTGCTTCGCTGTGGCCCCAGAAATGAATTCCCTGTGCAATAGCCAGGACGTGTCAGTGGACTCGCCGCCAGTCACTGGAAGTCCTAAAGGTCCTTACCTGGGGGTACCAAAGGGAACCATTCGCCGGCAGACCTCCATAGGGGTAACGGAAGAAGAAAAACAGTTCCTCACTCCTCCCATGTTGAAATTCACAAGAAGCCTGTCAATGCCTGATACATCAGAGGACATTCCACCTCCACCAGCCATCTCTCCACCATCTCCACCCCACAACAGTGGCCCTGCACCTGCGGGGCGTGGTTACGGCACAATCCGAGCAGGCTTCACCGCCCAAACCCCTGCTACAAACAGCACACCCCCAGAAAGAGGAGGAGACTCCAACATCGGTTCAGGCTGGAGAGAACAGGGCATGTTCTACAGAGACAGCCCTGAACAGTACGACTCTGAGGCTTGCAACAGCCCAACCGCCCAGCAGAGCCTTCACATGCGCCGGGCCCAGATTCCCGAAAACCCATACTCAGATGTTGGCAAAGGTCATTCTGCCCTGTTTGTGCCAAATAAGCCTGCAAGGAGGAAGGGCATGCTGGTGAAACAGTCCAATGTAGAGGACAGCCCAGAGAAAACCTGCTCCATCCCCATtcccaccatcatcatcaaagAACCTTCCACCAGCAGCAGTGGCAAGAGCAGCCAAGGCAGCAGTATGGAGATTGAGACATCTACACCAGAGCACACAGGCCAGCTCCGTCCAGAGGACGGACTCAACACAAGCAGCCCCTTTGCAACTGCAATGGTCTCCAGCTCGGCAAGGGAGAAGAGGCTTGAGGTGCACAGAAACTCACCATCTTTCAGATCCACGGATGCTGGGGATGAGGATGTAACTCCAACGCCTGCCCCACGATTGCGACACTCCAAGTCCATAGATGAGGGCATGTTTAGCAGTGACGAACGATTGAGAAGGCTCATGGCGCCTCCCTCATCTCTGCTAAGCATACCACGAGGTGGTGGCAACGTAACAGACTTCAACAGTCCAGAGCCCACCATGGTGCGGGAACTTCTCAACACTCGCACGGGACACAGTCCAATCAGCCTGCCAGCTCACAAGACCTACAGCTCAGGTGGTGGAAACTACGTCCACCCCGTCACTGGGAAGCCACTGGACCCCAACTCCCCATTAGCCTTAGCACTAGCTGCCAGAGACCGGGCCATGAGGGAGCAATCTCAGCCTTTGCCGCTTAAGAGTGACCCATCCAAGCTGGACCTCAACAAGCCACTCTTCATCGACACAAAGCTTCGGTCCAATGTGGATGTGAGCTTCTCCAGCACAGCCACCATGGGCAGGCCACGGGGAGGCTTGCGGAGACAGATGACTGAGTCCAAGTATGAGACAGAGTCAAAGTACCAACTGGATTTGGGCAAGCCTGAGAAGAGGGTGGAAGAGAAGAAGAACATGTTGATTGACATTGTGGACACCTCACAGCAAAAGTCTGCAGGGCTGCTAATGGTCCATACCACAGACGGCGCTAAATCAGAGGAAAACAGCCTGTCGGAGGGGGAGAGAGATGAGGACATCTGTCCGGACAGCACCCCAGGGGAACTTCGCGATCCCAACCAACCAGCACCTGTTAACCCTCCACCTAGCAAGCCCACTGCCCCGCAAGGAAAGACCATTATCACCATCAGTTCTGTAGATGAACCAGTCAAGCTTCCCTTTGGTATCCCTCCACCTCCTTTGGCCTCTGTAGACATTGATGAGGAGTTTGTATTCGGTGAACCCCTACCTCCCCCATTAGAGTTTGCTAACAGTTTTGATATTCCTGAAGATCAGGCAGGGGCAATCTCTGAGCTTCTGAAACAGAAAGCCAACGGCATAAGGAGACCTTCCCTAGGTCCCTACTACCCCCACTTAAATGCAAGCAACTCTGAGATTAAAAGACCGACAGTCCTTACAAACTGCACGCCTCCCAGCTTCCCAACTGGGCCTCTGGAACCCTACGAGCCCATTATCGACTCAGGCATCGAGGTGGACAGCCGGAGCAGTGGAGACCCCCAGCTGGAGACCACCAGCACTGTCTCCACTGTGTCCAGCATCTCCACTTTATCATCAGAAGGAGGAGAGACCCTGGACACTTGCACCGTCTATGCAGATGGACAAGCCTTTATGGTGGACAGGGCGCAGGTCCTGCCCAAGCCGAAGGCTAAGCACGCCGTCAACAAGAGCAATGCACTTTATAAGGACACCTTGAACGAGGAGAGCGTGGGCTCTTTCAGGGTGCCCTCCTCGgtcccaccaccaccccccggAACCGCCCCACCGGAGCCTCTGAAAACTCCAACACAAAGAACCTCAAAGCTCTGGGGTGAACCTCTGGATCTGAAAAACCCCCACGGCCCAGAGGCCAAGCCCCAGGGGATGTCCGAAATGAACTCGGTCCTGCAACACGTCAACAAGGACAAAGCACCAAAGCCAGGAGAAGCGTTAGACTCTCCCACAGGATGCAGGACTCATTTTGGATCGAGaaatACGGACGCAGTGGTGTCCCTTGTCTCAGGTACCCAGCAGAACACCGCCGTCTCCTTCAGCGCCCAGTCCGGCCAGAACGTGCCTGCTTCCCCTTCGCCGTGCCGGCAGTCCAACAGCTTGCCCTCCTCCCCGCACCCGTCACACCCCCCGCAACTCCCGCCACACTCTCACCCACACCACCCGCACCCCCGCGCCCCGAGTCCCATCATGTCCCCTCCGGACTCGGGCCTGAGCTGTGCCTCCTCGTCCTCGCTCCCGGCCTCCGCCGCCTCCCCCACCATGACGGACGTGTTCGGGCTGCCCACGCCCCCCCTCAGCCTGGGCACGGGCCGCAGCCGCTCCCCCTCGCCCCTCACCCTCATCCAGGCCGCCTCCAACAAGCCCTTCGCCACCAAACCCGTGCTGGCCTGGAGCAAGCAGGACGTGGCCGACTGGCTGGAGAGCCTCAACCTGGCCGAGCACAGAGACGCCTTCATGGACAACGACATCGAGGGCAGCCACCTGCCCAGCCTACAGAAGCAGGACCTCATCGACCTGGGGGTGACGCGCGTCGGCCACAGGATGAACATTGAGCGGGCACTCAAGTTGCTCCTGGACAGATGAGACTGGGCTTGGCTTCGCCGGGGGACGTCACAGCCTTCTTTTGTTCATAAAAGCTTTGTTCTGGTCATTCCTCTCTATCTTTTTTTGTATTCCGTTCACTTATTTATTTCGTTCACTTATTTATCATTGCCTGCGGTGGATTTTTTCTCCAAGGAAAGACACGCGACACACGTTCTGAAGAAAACTAAAAACGCCAGAGTTTTGACACTCGGCGCTAAGACTTTGTTCCGGCACAAGCACAAAAGCTCTTCGTACACAGAAGCTCCAGCTACTGACGGGACGTGACAAAGCCAACCGGCTGTGTGGAGTCCACGCGCTCTGGCCGACGGTTCGTTCTCTCCTTTGGCTTTTACTTTGGACTCGGGCCTGACGTGAATGCACTGAATACCAGCAGAGCTGGCCGACCATTTTCTATCTTTGCTAAGACGACTGATTATCCAGAGAGTATTTCTTCAGGAAAAAGGGAAGGATGGTATGTTTATCAGCTGCCTATGaaatattgtgcttttttttttttttgccctccTTCTACGCGTTCACAGTTCGGAAGTAGACGGATCTGTAAGGCGAGTGCGTTTGGTGCCGTGATGTTCCTCAGTTCACATTGCTCACGGTCCTGGGACAGGCATCCTCACCAGAAACACCAGGAGTCACACCTTTCTGTACGTGCATCGAGAGCGAGCTGCAGGTCTCTTGCCATTTTTCCATCTCCTTGTTTTTGGGTTATGGTTAACTTTTAGATATTTGTCTGAATGGGTCAAAAGAGAAATTACGCAAGTCTttctactgatatttagtgTCTTCCACATTGTTAGGAGGTCTAACAGCACTGCTGCCATTTTGTTTGGTTCCTGAACTCCTACTAGACTAGACTGCTTTTTTCCCTCCTGTATTTTTAGATCTTATTATCTCCCAGCTGTTTTCCTTTGTGCCACTAGATTCTCTCAGTATCACACTAGCTTggcaaatattcaaataaaaactgattggAGTATAAAGTCAGGTGAGGAACGAGGTTTAGGGGAGGTTTAGGAGAGCATCAGGACTGAAGTGTGGAAGAGTTGCCTTTAGAGAAACATCAGCGTTGTTTCTGTACCAATTAGCTTTGTGATTTGCTAcagtctacagtctgtaattcaTCCAGTGGCCTAACTGCATTGTCTACTGTAGGCATATCATcagttataattattttattcagtcatttaacttatgttttattattacccATTCAGATTTATTATTTGGATattctatttaaatataattgaaCATATCTATGTTTCTGTAGGCacactatttctttttttgtctcctGAAGGCATACTATTATTGattgtttattaattgtttattttacaacatattatttattataacccATTCAGAAAAATTATTTGGATATTTAATTCACAACTAGAGCGTTACACAAAACCTCCGCAAACTATACATATCACTGTCACAAATTGTAAAATGGTCAATTGTTTACTGGATGTTTTAGAGTTGCTTTGTGAAGTTGAATGCGAGAGTGAGCgcgagagcgagtgagagagacagaggttcTTTTATTTGTTGCTTTATGTAAAACGCAGACCATCTATCTACCTTGAAGCATGTTTTAAGTTGGATTACGGCGTACTCACCCCTGCTGTGCTGCTTTGTATTCTTTCTTATCTTTTCCTATTCGCCACAAAGTGTATGTTGTGTTAAACGCTCTTTCCCATCCCCCTGCCCTTCACTCTTTCTGACCCTTAAAGCTCCCTGCTTTCCTCCATTTGTGAGGAAAGTcatgttctattttattttattaattttatttgccTTGGTGGCCAAATCTAGCTTGAACATTTGCTCATCACATTTGCAGCTTTACATAGCCTATAAAAGAGCTAATCACCATTTGATAGTACAATTAATTGAATCAGTCTTATTGAATTAGCCTGGGTCGACTCTTTGTGCATCAGCTGCACCCGAGCATCATGCAATACAGTCTGTCTTTGTTTTAATACCCAGTCATTGTGCAACAGACCATACATACACAAATCATACATCCTTTCAAGCCTTCAAACGAGTTATCAACGAGGGTGGACCATCATTTCAGTCGCTTTTGGACTGACTGACCAGCCAGCAGCTTCATACATTTCATCTTTGGTTGCATTAAGTTCTGAGTACTGTGGTTATGCTTGAACTGAGGGAAAAGTCATAGTAAcagatatgaatatgaatatggaAAAAATGAATGTGAATGGACGGGTCGAGTGCACCCAGACGGTGTTCGGTGTAAGTATGCAGTGAAAGATATTCAGCAACGTGTTTGCTTATCTCTACCTTAGAGGAGTTAGAGTTATCAATCATCtctatatatcttattttaggAAACAGCACagtattttaaagatttatagaactatttGAGATTTTTATGACATTTAACTGATCTGTGGTGTGCCAAAAAATTCTATGTGGTATCGGTTAAGAAGCAATACACAATCTTCAAGAAAACtgtttggtctatttttttcttgccaGTATTCCACGTACAGTATATCAATGACATTTCGAACAAatgaaatttatatatatatatatatatatacatatatgaatataaatataaatatataggtCTCAGTGAACTAGAGAATATCTCAGTATTGAGCTAATGGCTGTCACTTGCTTCTTTTTAGactctgtaattaaaaaatgcaaagttCAAATTTAGATACGTGTGGTGTGCATAATTTACAGACACACACCGTTCACCAGTCGAACACACTAGCGTGATCACTtctactattaaaaataaagctcctccaaaaggttctttaaacaatgccacagaagaaccacttttggttccctAACAAACCGTTTTTGTACAAAAGAACCTTTTCATGGTGTTGAGACGAGTGGTTCTTCTCTGGCTCTACTCAAATAACCTtttgaagcacctttatttattaattattagataaagaatttaaatacaaaaaaaaaatcacctgaaCTTGAGTATGTGAAAGTATAAtcagttattttttaaactaaattctGAAATGAAGTAGTGACGCATCCTACACTCACTGAGGTTTCCAGAAGGACGTATCCAAATAGATTTGGATATTAGTCTTTATTTTACTATACATAGATGTGTCTCTCACACCTCGTGTGAAGATTGAATTCACTGGATCTATGTTGCTGTAATTTTGTGCTacaaatctttttatttattttagggtAAAAACTATTAAGGTCAAAGAGAGAAGTTTATGTGACTGCACTTTTCCTCTAAATCCTCAATACTCATGTATGGAAAAACCAAAACTCACAGGaagaaataaatatgatattACACAAA

Function

GO: NA

KEGG:

id description
K15009 SHANK; SH3 and multiple ankyrin repeat domains protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281885 lncRNA downstream 11899 24517463 ~ 24520749 (-) True G207705
TU281881 lncRNA downstream 24705 24506149 ~ 24507943 (-) True G207702
TU281861 lncRNA downstream 35984 24443276 ~ 24496664 (-) True G207692
TU281864 lncRNA downstream 82110 24446266 ~ 24450538 (-) True G207693
TU281799 lncRNA downstream 332216 24197461 ~ 24200432 (-) True G207639
TU281968 lncRNA upstream 65658 24812654 ~ 24812952 (-) True G207763
TU281973 lncRNA upstream 144737 24891733 ~ 24892263 (-) True G207767
TU281975 lncRNA upstream 150306 24897302 ~ 24946528 (-) True G207768
TU281974 lncRNA upstream 198968 24945964 ~ 24946528 (-) False G207768
TU281993 lncRNA upstream 215576 24962572 ~ 25045617 (-) True G207781
XM_022683846.1 mRNA downstream 17918 24508237 ~ 24514730 (-) False ciapin1
XM_022683845.1 mRNA downstream 17948 24508237 ~ 24514700 (-) True ciapin1
XM_015601505.2 mRNA downstream 116217 24410828 ~ 24416431 (-) True LOC103032449
XM_022683834.1 mRNA downstream 318989 24172289 ~ 24213659 (-) True mpped2
XM_022683835.1 mRNA downstream 322855 24172289 ~ 24209793 (-) False mpped2
XM_022683857.1 mRNA upstream 10235 24757231 ~ 24772301 (-) True LOC103042272
XM_022683856.1 mRNA upstream 10398 24757394 ~ 24774151 (-) False LOC103042272
XM_022683858.1 mRNA upstream 32417 24779413 ~ 24788023 (-) True LOC111195752
XM_022683859.1 mRNA upstream 66334 24813330 ~ 24830963 (-) True LOC103044011
XM_022683862.1 mRNA upstream 157574 24904570 ~ 24910773 (-) False LOC103042358
TU281888 other downstream 3581 24524734 ~ 24529067 (-) True G207707
XR_452612.3 other downstream 512334 23938925 ~ 24020314 (-) False dnajc24
TU281979 other upstream 201135 24948131 ~ 24948851 (-) True G207772
TU282177 other upstream 570006 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 901628 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 908981 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 956470 25703466 ~ 25708310 (-) False G207940