RNA id: TU282177


Basic Information

Item Value
RNA id TU282177
length 1711
RNA type TUCP
GC content 0.45
exon number 3
gene id G207903
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25317002 ~ 25352674 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAAGCTAACGGAAGAGCATCTGTTCCACATCTGCAATCTATGGCCACTGTTGTCCCGTGTGCCTCCTGCTACGCCAGCAGCAGTGTCCAGCCGTGGGGTTTCTTCGGAAGGGGTCCTGGAGGAGGCTACATGTCCCTCCTGAGCTATCCCGGGCAGCGTGGGACCCCAAAGCCCCGCCTGGCCGGCCATGACCCAAACCTGACTCTGCGTCAAATCTGCCACATGCTGCGCGTCATGCGGAAAGTCCGCCGCAGAGAGGCagctgctgccgccgccgctgcaAGGAAGCAGGCCAGTGCCTTGGGCGTCCCCAACTCCCCCACAGAAAAGCGCTGTCTCCCAGCCTGCTTCCGCCGCAGACGCTCCAACAACCTGAAGAGAGTCAGCTAATACAGGCTGTTCTTGCCCAGCCCTACTGAAGCCCACCTGCAGCCCCCCAGTGGACCAGGGCAAGCTTACTTTGTGTTGATTAAAGGACGGAGCTCTGATTCCTGTCACTTGGAGATGTGAGAGTGGAGCAGTGACTGCAAGTTCTTTCATTTCCTTGAGCTGCTTGAGAGTGCGTTTGTCCAACTTCCACAAACCAACTGATGTGATCAGAAGAGAAACACGGATCTCCTACATGCTCATGCTGGAACCTCGTCTGGGTGATGACACATTCATTCAGGACAAGATCAGACCCCTGGCTACAAACTCGGACTGTCGTCTTTACACTCAAACCTCTGAATCAAGTTGGCTGTGTGATCATCAACAAACCGTAGTTTAATGTGGAGGTGACCAAGTCTGAATATCCTGTCTTTATTGGATTTGAATGGAAATGTGTGGATGAGttgaattaaatgtttaaatggatTTCTTATTGCTTCCTTTGGACTTTTTGATCTGTATCATTTTCCAGTTATTTACATGGGTAAATATGAGTGAAATAAGTCATATTCCATAAGGCAGATGGGCCTCATGTGTTTGGTGCATTAATAATGAATTCAGAAATGAGtctgtttgtttactttgtttgaTTTTGGATTTTATGTGCTTGcttatttgtaaaatgtatgtttgtttgttctattttgtgttattttagtgaAGTCTGTAATTCTGTCAGGTCATATATGTGTCCTATATGTGTTTGTTAAGTCTGCAGAATGGAGCCTTTGTTTACTTTTTCCACTTGAAGTGGTGAATTGCACTAATAATCCAGCTGTGAAATTTGTAATTGCCTTctctttaatttgtgttttttttttttttgcaaaatcttGTAAAGTCCAATCAAGTCAGAGTGCCCAGAGTGTTGGGTGCATAAACTAAATCTGTGGAAAGTTCTCatcagaaaaagaaataagacacgcctatttgtttgtttatttatttatgtgattGTTTGTGGTCGTGTGTGGGGCCTGTGGCCCGTTGGTGTGTGTGGGCTGGTGTGTGTTACCATGCTAAACCTGACCCTGTTATGAGCACTGCCCGTTCTCCTCTCACTCTGGACtgggttttttttaatgactaactgaaaaaaagaaaagtcgtGAGTTGGACGTGTTTACTCCTGCATGTCTGTGCTGTAGAGTTTGCGTGGTTTGCTGTGGTTTAATAAAATTGATTTGCTTGAGAAGACTTTGTGGATTTTATGCTGAAACTGGTTCTGAATGCAGACTTGTCTTCTTCCTAATTTATATGTGACCAACATGTTTTTGTaatgc

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282155 lncRNA downstream 17310 25279365 ~ 25299692 (-) True G207886
TU282150 lncRNA downstream 57168 25258840 ~ 25259834 (-) False usb1
TU282131 lncRNA downstream 123329 25191237 ~ 25193673 (-) True G207874
TU282138 lncRNA downstream 150324 25153628 ~ 25166678 (-) True G207881
TU281993 lncRNA downstream 271385 24962572 ~ 25045617 (-) True G207781
TU282204 lncRNA upstream 108379 25430004 ~ 25430323 (-) True G207926
TU282206 lncRNA upstream 116424 25438049 ~ 25442155 (-) True G207928
TU282214 lncRNA upstream 142916 25464541 ~ 25467095 (-) True G207934
TU282218 lncRNA upstream 232622 25554247 ~ 25557367 (-) True G207938
TU282201 lncRNA upstream 254443 25576068 ~ 25582312 (-) True G207924
XM_015602397.2 mRNA downstream 39242 25270141 ~ 25277760 (-) True ccdc113
XM_022683873.1 mRNA downstream 56835 25251235 ~ 25260167 (-) True usb1
XM_022683874.1 mRNA downstream 56835 25251932 ~ 25260167 (-) False usb1
XM_022683875.1 mRNA downstream 56835 25254424 ~ 25260167 (-) False usb1
XM_022683871.1 mRNA downstream 85991 25212565 ~ 25231011 (-) True drc7
XM_022683879.1 mRNA upstream 90561 25412186 ~ 25452091 (-) True LOC103040081
XM_022683882.1 mRNA upstream 174676 25496301 ~ 25572271 (-) True znrf1
XM_022683890.1 mRNA upstream 359605 25681230 ~ 25685611 (-) True LOC103040521
XM_022683893.1 mRNA upstream 600956 25922581 ~ 25933202 (-) False LOC111195756
XM_022684337.1 mRNA upstream 667939 25989564 ~ 25992281 (-) False LOC111195825
TU281979 other downstream 368151 24948131 ~ 24948851 (-) True G207772
TU281888 other downstream 787935 24524734 ~ 24529067 (-) True G207707
XR_452612.3 other downstream 1296688 23938925 ~ 24020314 (-) False dnajc24
TU282224 other upstream 326999 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 334352 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 381841 25703466 ~ 25708310 (-) False G207940
TU282294 other upstream 597595 25919220 ~ 25938032 (-) True LOC111195756
TU282304 other upstream 667813 25989438 ~ 25992494 (-) True LOC111195825

Expression Profile