RNA id: XM_022683873.1


Basic Information

Item Value
RNA id XM_022683873.1
length 1860
RNA type mRNA
GC content 0.41
exon number 11
gene id usb1
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25251235 ~ 25260167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAAGCAGCATCCACAACACAGCGCACCGGAACCTTTAATATTTTGATCCgaaatttttcgaagaataactaaTTTCTTGTTGCGTTTATGAATTAATAATGTCAAAAAGCTCTAGGATggccttttcttatttttaccaATATTTAATcgattaatagtaataatagcatGAGCGCGAATCCGAAGATATTTACTCTATTAGCTAGAGGTAGCGAAGACTGATTCATGAGCTTGTTTGATAAgctaaaacatttaatagttgtttctttaaataatttCGCGTTTCTgtccattatttgtttttttttttttatcacttattGGGGTAGGTGGAACTCCTCTGAGCATATGCTGTTGAAGAGGGACTCCTGACAAGGAGACACTTAACCTTTTGTTTTCAGCGTGAGAATTTCAGCTTCTGTCTGATTTAAGCTTTTGTATTTTCAGCTTTTTAAAGTGAAATTTGCTGAAGACAGATTTTTTAGTTCTGctgtacttgttttttttttttttacccaaaaacTCGTTTTTGTTTTGCCGGTAAAACATCTGTCAGGCTTGTTGGAGCCTTTAAAATAGAAACAGCAGGTTAGTAGGTTAGCTGTATAATCTGcagctctgataaaaaaaaataataaaaaaaactactgctGAGTTATTACTGAGGGAGGTCATAAGAAAGGTGAAGGAGAATTATGCTGGTTAAttacagcagcagctctgaAGAGGAAAGTGAAGATGTCGCTGGACGAAGCAGAAAGCGTCAAAAAACAAATGGCAGCGATATCAGTCCCCATTATAAGAAAAGGGAATGCTCAAGAGGGAAAGATAACATGGAGAACAGGGTCATTAGTGACTGTGCAGGAGAGATTGTAACTGGTCAGGCATCTCGCCTTCCCCTGCCCTCCACCCTGCTGGACATGTTTCAAGATACAGAAGAGCAGCACGTGGATGACTGTGTGCAGCATGGAGGACGGCAGCGGTCCTTCCAGCACGAACGTGGCAACTGGGCCACTTACGTTTATTTGCCATATGAGCCTGAGGACGTGTTCCTGGAGTTGCTAGAAGAGCTGAGGGTCTGTGCTGAAGCTCATGGTGTCTCCTTCACCTTGGCAGAAGAGTTCCATGTCAGTGTCTCTAAAACAGTGGTTCTACGACACCACTGGATTCAGCCAGCGGTGCAGTCTTTGCGCTCTGGCCTGGCACAGTGCAGAAGTTTTGTATGTCTGGCAGATAAGTTGAAGGTGTACTGCAATGATGAAAAAACAAGGACTTTTCTCGGGATGGAAATCTCGACAGGCTGCACACAACTACTGGAGATAGTGAAAAGAGTGGACCAGACCATGCAGGAGTTTAACCTCAGCACTTTCTACAAGGATCCATCGTTTCATGTGAGCCTGGCCTGGTGTGTTGGTGATTTCACTGAGAAACTACAGGGTGCATGTTTATCAAAGTTGCAGAATCTGGTGGATGGTCATGAAGATGGACCCTTTCAGTTAAGGTTGAATTTTTTCAGGTCACTGTTATTCTGCTCAAGTCAAGATTTATTCCTCACCTTCAGGAGCTTGTACAGTCATCACTTTTGTCTACCTGAGAGCAAAACCTGTCTTACAACTCCATACAACTCCAAGgaaaAATTGAGACTACAtcacaacaaaccatgtgagaaCATTCTCTTCACTTATCAGGTCAGACCTGTCTTGTGTTCTAGACTAGTGCATATTTCTGTGCAATTTCATTTTGGAGCAATTGCGGCAAAGAGGGTGTTTGTTCaGAATATGGTTTAAAAGCTAAAACACTCTATACCACATGCTGCACTGCAAATATAATCTACTACAGTAAAATCTCTCATTTAAAA

Function

GO: NA

KEGG:

id description
K23093 USB1; U6 snRNA phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282131 lncRNA downstream 57562 25191237 ~ 25193673 (-) True G207874
TU282138 lncRNA downstream 84557 25153628 ~ 25166678 (-) True G207881
TU281993 lncRNA downstream 205618 24962572 ~ 25045617 (-) True G207781
TU281991 lncRNA downstream 205618 25031099 ~ 25045617 (-) False G207781
TU281974 lncRNA downstream 304707 24945964 ~ 24946528 (-) False G207768
TU282155 lncRNA upstream 19198 25279365 ~ 25299692 (-) True G207886
TU282178 lncRNA upstream 56835 25317002 ~ 25352674 (-) False G207903
TU282204 lncRNA upstream 169837 25430004 ~ 25430323 (-) True G207926
TU282206 lncRNA upstream 177882 25438049 ~ 25442155 (-) True G207928
TU282214 lncRNA upstream 204374 25464541 ~ 25467095 (-) True G207934
XM_022683871.1 mRNA downstream 20224 25212565 ~ 25231011 (-) True drc7
XM_007237101.3 mRNA downstream 100246 25143991 ~ 25150989 (-) True c24h11orf49
XM_022683862.1 mRNA downstream 340462 24904570 ~ 24910773 (-) False LOC103042358
XM_022683861.1 mRNA downstream 340462 24904570 ~ 24910773 (-) True LOC103042358
XM_022683859.1 mRNA downstream 420272 24813330 ~ 24830963 (-) True LOC103044011
XM_015602397.2 mRNA upstream 9974 25270141 ~ 25277760 (-) True ccdc113
XM_022683879.1 mRNA upstream 152019 25412186 ~ 25452091 (-) True LOC103040081
XM_022683882.1 mRNA upstream 236134 25496301 ~ 25572271 (-) True znrf1
XM_022683890.1 mRNA upstream 421063 25681230 ~ 25685611 (-) True LOC103040521
XM_022683893.1 mRNA upstream 662414 25922581 ~ 25933202 (-) False LOC111195756
TU281979 other downstream 302384 24948131 ~ 24948851 (-) True G207772
TU281888 other downstream 722168 24524734 ~ 24529067 (-) True G207707
XR_002651784.1 other downstream 1230921 23956346 ~ 24020314 (-) False dnajc24
TU282177 other upstream 56835 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 388457 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 395810 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 443299 25703466 ~ 25708310 (-) False G207940
TU282294 other upstream 659053 25919220 ~ 25938032 (-) True LOC111195756

Expression Profile