RNA id: TU282294


Basic Information

Item Value
RNA id TU282294
length 2780
RNA type TUCP
GC content 0.36
exon number 6
gene id LOC111195756
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25919220 ~ 25938032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctgcctatATAATGGGGTAGAGAACTCTGAGtctacacacactgctctctctctctctctcctccacagCAGAAGAGTCTtcagtgtctctgtgtgtgaatCAGGATCTTCTGCTAGAATGAGGAGTGGATCTGCTCTGCTGTTGGTGCTGCTGCTCGGCTCTCTCCAGCTCTCCTCTAGTGCTCCTCACGGGACCTCTGTTGCTGACTGCTGTCCCAAACTGACTACAGTGAAGACGATTCCTCTGAGAATGGTGAAGTCTTACACAGAGACACGCAGCGACTGTGCCGTTAAAGCCATTGTACTATTGACTACAAAAGGAAAGACATTTTGTGGGGATCCAGATGCTGAGTGGGTGAAAAGTCTTGTCGCTGCTCTGGACCAAAGAAACACCCCTACCACTGCAAAACCTTTAACTACAAATTCCCCAACTCTCTCCACTGCTAAGCTCTTTAGAGAAGAGTATTGAGTAAAAAAGGAACGAGGTATTGTGTGCATCCAGATGCACATATCCATACGCGGCCGAAACGTCATGTCACTGCTCTGGACTGAAGAAACACACCTACCACTGCAAAACTTTAACTACAAATTCCACAACTCTCTAAGCACCTCAGAGAAGTTCACCCTGATTAACTGATTATCTAATTCTTAAAcacttttttgggttttcattggctgtaagccataatcatcaacaataaaataaataaacgcttaaaatagatcactctgtgtgtaatacatctatataaaacatgagttttacattttgaactgaattactgaatcaCTTACAGAGTGTGATACAGTGACATCGGTTGGATGCctttatttatattcttttacattaaccaatgtaaaaataattattaggaATAAGAATAAGTAAAAGTATTTCACATTAACTACGGTATTGATTGACAGAAATAAAAAGTactatatgtaatatgtaagaCAAACTCTATATATCAAGTGCATTATGCAGCATATTGCTAGTCATGTGACACCTGAAAATGGGTTATCTTCTATTCCTTGTGCACCTGTGTCTGCCAGTGATCTCCCAGCTCCCAGATCATAACTTTGACATGCATATCATGCttcacagtatatttatatatatcttaatatggtttatatatcacacagacagtcatcctgcatcagaagaatgtttatttcctttattcatgactggatttactgtatttatgttcctTTGCATACAAAAGCCAAAATAAAGGCAGCGGCACAGTTAGGCGACTGCTCTCCCCACAGATGGCACCTGCttacgactttaatcttgtaatattatgattttcatattgtaatattatgactttattctcataatactATGACTTTATAATCTTAATATTACAACTTAATTCTCAAAGTCACCTCAAAGTGGCTCTAAAATGctgtaataaaaacacattattatgcATTTTGACAAAATATAATGTTTAGTATTCCAAAATGCAATAATctagttttaaatttacaagAAAATAATTTCAGAGAGATTATAGTAAATTAGACATTTGTCTAAATGATAGTAGAAGTGCATGCTGTCAGTTATTGTGAACGCTCGTTCAGTTTAGCAACGCGACTCTTGACCCAATCGGCATCTGGATCCACACAGAACTTCCTTCCTGCTCTAGTGTTAAACCTGCAACAGAAGATAAAGTATAGTTAAAAATATACTGactttaaaatttactttaaaacatatGAACACATAGAAATAACAAACCATCATGTCAGGAACTAGagttaaaactattttaaagtgGCTAATATGgaacatttacagaaaaaaatattattgtgcaCCATCTCACCATCACCGACTAAacttatttaagtaaaatattcatttaataatttaagtaaaatataaaattattcattaatttatgcCCACAATAACAGCTAATAGAAGAGTGCGTGGGATCATTTCTACTCACACAATGGCTTTGATAGGTCTCCACCAGCCTTAGAGGAAACTTCACTGTAGTCAGTTTGAAACAGCAGTCAGCAACCGAGGCCCCTTGAGGATCTGTAAAAATCACAAACATCAGATTAGCACCATCTCACAACACACAGATATGTGATATTTACAGGAAGGTGATTagttctctgctctctctcacaGCGTCACTAATGCAGCTCAGTGTACTGAGTTCACTCACCACTAGAGGAGAGCTGTGTTATTTCATAATTTCTATGCTATTTAAGTAGTATTAATCTAAAACCACCATATAAACGAGAGAAATGCTGATACAGGTCAGAGCTGAGTTCTGATCCGGGTACTGGAAGGATCACAGTCCAGTTTTTGGGGAAACAGAGGGGAGGGCACTATCAGATTACATAAATCCCTTACTGAACACAAAAACAACCTCCAtttataaaatactgaaagggtTTAGCACCTCTAGTGGTCATAAATGGTATGAACAGAAATAGCTCTCAGAATTAAAGATGATTTATTAGACCAGGTCTAATTCACCCGTTAgttatcagtttctctgattttgctatttgtatgtatatatttaagtaaaataaacattattgttttattttataaattaaaaaacaaaaacattgtcatttagagcatttatttgcagaaaatgaaaaatggctgatatgacagaaaagatgcagagcttcagaaatcaatatttaatggaataaccctgtttttttatcactgttttcatgcatcttggcattttctcctccaccagtcttacacactgcttttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282270 lncRNA downstream 1660 25903907 ~ 25917560 (-) True G207965
TU282268 lncRNA downstream 24743 25893140 ~ 25894477 (-) True G207964
XR_002651788.1 lncRNA downstream 63659 25852905 ~ 25855561 (-) True LOC111195755
TU282227 lncRNA downstream 185916 25592631 ~ 25733304 (-) False G207940
TU282225 lncRNA downstream 185916 25653592 ~ 25733304 (-) False G207940
TU282327 lncRNA upstream 69188 26007220 ~ 26013616 (-) True G208008
TU282331 lncRNA upstream 76715 26014747 ~ 26015003 (-) True G208011
TU282339 lncRNA upstream 123279 26061311 ~ 26076646 (-) True G208015
TU282337 lncRNA upstream 141732 26079764 ~ 26086504 (-) True LOC111195762
TU282332 lncRNA upstream 146540 26084572 ~ 26085450 (-) False LOC111195762
XM_022683890.1 mRNA downstream 233609 25681230 ~ 25685611 (-) True LOC103040521
XM_022683882.1 mRNA downstream 346949 25496301 ~ 25572271 (-) True znrf1
XM_022683879.1 mRNA downstream 467129 25412186 ~ 25452091 (-) True LOC103040081
XM_015602397.2 mRNA downstream 641460 25270141 ~ 25277760 (-) True ccdc113
XM_022683875.1 mRNA downstream 659053 25254424 ~ 25260167 (-) False usb1
XM_022684337.1 mRNA upstream 51532 25989564 ~ 25992281 (-) False LOC111195825
XM_022683900.1 mRNA upstream 145132 26083164 ~ 26085641 (-) False LOC111195762
XM_022683899.1 mRNA upstream 148619 26086651 ~ 26088415 (-) True LOC111195761
XM_022684393.1 mRNA upstream 154138 26092170 ~ 26095191 (-) True LOC111195867
XM_022684340.1 mRNA upstream 158773 26096805 ~ 26099827 (-) True LOC111195834
TU282224 other downstream 210910 25648624 ~ 25708310 (-) False G207940
TU282223 other downstream 210910 25655977 ~ 25708310 (-) False G207940
TU282220 other downstream 210910 25703466 ~ 25708310 (-) False G207940
TU282177 other downstream 597595 25317002 ~ 25321625 (-) True G207903
TU281979 other downstream 970369 24948131 ~ 24948851 (-) True G207772
TU282304 other upstream 51406 25989438 ~ 25992494 (-) True LOC111195825
TU282385 other upstream 274026 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 274026 26212058 ~ 26212769 (-) True G208046
TU282801 other upstream 717411 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 1208004 27146036 ~ 27152300 (-) True LOC111195771

Expression Profile