RNA id: XM_015602397.2


Basic Information

Item Value
RNA id XM_015602397.2
length 1201
RNA type mRNA
GC content 0.47
exon number 7
gene id ccdc113
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25270141 ~ 25277760 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTTTAAGCTCCGCTGTCCTCCTCGGCGACGGCCATgtttaccatagcaaccatgaAGGATCCGGAGAAAGGCAGCTTTACTAAAGCAGATATGAAACTAACGCGTGAACAGCTGGAAGACTTGAGGCGTTTCAATGCAGCCTTACAGGCTGAGAATGAGATGTTTGAGCACCAAGCCCTGGTTTCTCAGGCTGTGCCAGAACATTTGGGTTCTGTTGCATCAATGGCACATGGGCATCCCGGGCGCAGGAGGCAATCTAAAGTTCTGAGGCCATCTCAGAAGGAATCATCACAGCTGCTGGGGCTGGAGCAGAAGGTTTTCATTGCTcagagggagatggaggagcTGAGGAATGATCTGGAGAAGCTAAGACAAAGTTCAGACAAGGAGACTCCTGCAAAGAGGCTGTGTCAGAAAAACACGGCTCGTCACACACAGAAGcgtaagctaaaactaaaaatgaggCAGAAAGAGGAGGTGGAAAAAACTTTTCACAAGGTGGATCTCCAGAAGCTGAAGATCGAGAAGAGACAGTATATTGAGCAAATTGACAAACTTAGCCAGGACCTGCAGCAACTCAGTGTGCAAGGTGGAAACATGCTGAAGGTCTTCAATCAAAACAGGACAAAGCTTCAGAGCTTGACTCTTGAGTCAGAGTCGCTGAGCAGTGACATAGCCTCGCGTGAAGGCATGCTCATGAAGCTTGAGGAACAAACTCAGCAGGTGGAGAAGGAGCGTGCTAAAGCCGAGTCTAAGAACAAGAAACTGAGAACACGGCTGTCCGATTTCCACGTGCCAGATGTGCTCAGCTACGTTGAGGTCAATGCTTTACACACCAAGCTGGAACAGGACAACAGGTTTTGCGAACGCAAGGTGGCAATCGCAGAGatgGGATTGAAGACTCTCACCAAAGCATGGAACAAGCATCGAGCTACAGCTGAGGCGGCACTGCCACCCATATAAACATCTACCGTAATGAAGCTTCTGTTACCTGCTCAATTGCAATGCTAAAGAAGCCTTCATGTGATTGGTTCTATTGTAGAATAGCCGAAACACAGGGTTCACCTGTTCGGTGTGTTCAGATTCTGATTATAAGTATTTAAATCATTATGccacaaaatgtgttttgtcaCTTACGTATTGCATTATTACTTCACCTCTTCCTGCATATTAGCTAATAAACTCTTAGcggtcttgtg

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005929 cilium cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282150 lncRNA downstream 10307 25258840 ~ 25259834 (-) False usb1
TU282131 lncRNA downstream 76468 25191237 ~ 25193673 (-) True G207874
TU282138 lncRNA downstream 103463 25153628 ~ 25166678 (-) True G207881
TU281993 lncRNA downstream 224524 24962572 ~ 25045617 (-) True G207781
TU281991 lncRNA downstream 224524 25031099 ~ 25045617 (-) False G207781
TU282155 lncRNA upstream 1605 25279365 ~ 25299692 (-) True G207886
TU282178 lncRNA upstream 39242 25317002 ~ 25352674 (-) False G207903
TU282204 lncRNA upstream 152244 25430004 ~ 25430323 (-) True G207926
TU282206 lncRNA upstream 160289 25438049 ~ 25442155 (-) True G207928
TU282214 lncRNA upstream 186781 25464541 ~ 25467095 (-) True G207934
XM_022683873.1 mRNA downstream 9974 25251235 ~ 25260167 (-) True usb1
XM_022683874.1 mRNA downstream 9974 25251932 ~ 25260167 (-) False usb1
XM_022683875.1 mRNA downstream 9974 25254424 ~ 25260167 (-) False usb1
XM_022683871.1 mRNA downstream 39130 25212565 ~ 25231011 (-) True drc7
XM_007237101.3 mRNA downstream 119152 25143991 ~ 25150989 (-) True c24h11orf49
XM_022683879.1 mRNA upstream 134426 25412186 ~ 25452091 (-) True LOC103040081
XM_022683882.1 mRNA upstream 218541 25496301 ~ 25572271 (-) True znrf1
XM_022683890.1 mRNA upstream 403470 25681230 ~ 25685611 (-) True LOC103040521
XM_022683893.1 mRNA upstream 644821 25922581 ~ 25933202 (-) False LOC111195756
XM_022684337.1 mRNA upstream 711804 25989564 ~ 25992281 (-) False LOC111195825
TU281979 other downstream 321290 24948131 ~ 24948851 (-) True G207772
TU281888 other downstream 741074 24524734 ~ 24529067 (-) True G207707
XR_002651784.1 other downstream 1249827 23956346 ~ 24020314 (-) False dnajc24
TU282177 other upstream 39242 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 370864 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 378217 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 425706 25703466 ~ 25708310 (-) False G207940
TU282294 other upstream 641460 25919220 ~ 25938032 (-) True LOC111195756

Expression Profile