RNA id: XM_022683879.1


Basic Information

Item Value
RNA id XM_022683879.1
length 5861
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC103040081
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25412186 ~ 25452091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgatttttctctcttttatgtcCAGGTGATGACCCACTAGGTCTCCAGCATCCTGCCGTCACACACCCCAGCCCTGCATACACCTTTGTATCAAACCAATATGGCCGCCACCAAGAGCGGCTATGAGGGGAAGATCGCCGGCCTGTACGATCTGGACCGGACTCTGGGCAAAGGTCACTTTGCCGTGGTCAAACTGGCGCGGCACGTGTTTACCGGCCAGCTGGTGGCCGTGAAGGTGATTGACAAGACAAAGCTGGACGGGATGGCCATGGGACACCTGCTGCAGGAGGTCCGCTGCATGAAGCTGGTGCAGCACCCCAATGTGGTGCGACTCTACGAGGTGATCGACACGCAGTCCAAACTCTACCTGATCCTAGAGCTGGGCGATGGCGGCGACATGTATGACTACATCCTGCGCCATGAAGGTGGCGTCGCTGAGGAAACCGCCAAGGTCCACTTTGCCCAGATTGTTCGAGCCATTGCGTACTGCCACCGGCTCCACGTGGTCCACAGAGACCTGAAGCCGGAGAACGTGGTCTTCTTCAGACAGCAAGGGACTGTCAAGCTTACTGACTTCGGCTTCAGTAACCACTTCCAGCCCGGGACCatgctgatgacaagctgcggATCACTCGCTTATTCAGCTCCAGAGATCCTGCTAGGAGAAGAGTACGACGCTCCAGCCGTGGATATCTGGTCACTGGGTGTGATCCTCTACATGCTGGTGTGCGGCCACCCGCCGTTTCAGGAGGCCAACGACAGCGAGACGCTCATCATGATCATGGACTGCAGATACACCGTCCCAGATCACGTCTCTGCAGAGTGTAAAGAtCTTATCTCTAGGATGCTGCAGAGGGACCCCTCTAAGCGGGCGAGCCTGGTTGATATTGAAGCCCACCCATGGCTCAATGGGGTCGACCCCTCGCCTTCTGGCCACAGCGCTGCCCCGCTTACCTCCCACCGCAGCCTCTCCCCACACGAACACGAACTCATCCTGCAGGCCATGACCAGCGGCAACATCGCGGACAGAGACACCATCCAAGAagcaCTGGAGGCTGACAGATATAACCACATCACAGCTACATATTACCTACTGGGAGAACGCATCCTACGAGACAAGCAGGAGCAAAATGGCCTCGCTCCAGAGCAAAGGCATACAGAGAGGCCCTTATCTGAGCCACTGGACCTGGTGGAGGGCCGGAGTCCCCAGGCCGATCCCCTGAGAGGTGCAACTTTGGCTCCTGTGGCTCCACTAGGCTCCCTATCTCCAGGGTTCCCCCGCCGGGGCGTGTGTGAATCCGGAGACCTGCTGGCTCCCAAAACCAGTCGTCAAGACGGCTCCTTCGGCGACTTTGGTGCCCCAAGCTCCTGCCTGGGTCTTAGTCTCCGTTCTGTAGCTCCAGAACCAGCCCCAACTGTGAAAAGCCTTGGGGCTCTACAACAAATctgtgaagaagaagaggaggacgATGTGGAAGGTGAAGAAAAGGAGCAAGGTGAAGTTCAATCTGCTCAGCAGGTTAGCAAACCTTGCTTAGAAGTGTCAGAAGAACCTTCTTCAGAATCGTCTCACTCACTTTCTGGCTCAGAGCAGAGGAAGGGAAGAGGGAAGGTTGGGATGTTAGTAGAGGAGGCACTTCAAGAGGTGGAAGAAGAATGTGGTAAAGAACAGGAATCACAAGATTTAGCGGCTAATATCTGCAGGATGACTGAGGAGCATCAAGAGAAGCACACCAGCAAACAAATCAGTGAAGATAAGGAGACCATGTCCCAGACTGAGGGAACACAGAACAATAAGCACCCAGGAAGGGATGGACTGGGGAACAATCTTGACAGCACTGAAGATGAAGGACGGAGGGAGCAGAATGGACCTCCTCCAACAGAAGCACCTAGACTTAATGCTGTGCAATGTTGCTTGGGTCAACTTGAGCCCTCCAAGGACACTCTAGAGGACAATAACAACACTCCTTCCAAGGCAAAGCTTCTGGACAAAGGTGTGATCTCTGCCCCCTGCAGTTCACCACGCTCTTTGCCCAAGAACCACTGCGTGGACCTGGGCCCAGATGGAGTGGAGATGCGCAGGATGGGTGGGGAGGGTGAGAAAGTGGAAGAGACCCATACCAAACCTCAACAGGGCCACCGGGTATCTAGGGATGCCGGGACGGACATCAAGAACAAGAACGTGAACCTGCGAGACCGCCTGTTGCAGTTTCCTCTCTGTGAGAAAGCCCTGTCCTTCAATATTCAGCCCACCTCCAAAGAAAAACTGCTTCCCTTCGCACAGTATAACTGTTGCCACGTGCTATAGGACGAGAGAGACGTTCTGATGAGAATGAATGAGGAGAATGTGAAAGATCGAGAGCAAGCCTCTCTCTTTCCCAGATCTCTACATTCCCTAAACGTGTATAAGCCGTCCAGACCTTCTCCAGCATCATTAAATCATGCTAGCTCGTGGATCAGGTTACTTCTCATTTCTCCTCCCTTCTCCAACACCAGTAGTTTTTAAaagacacagtgtgtgtgttctcctcTCTTACTGTGACCTCAGAGGTGCTCTGGCTACACACAGAAAGCGCCCAATCTACTTATCTTACACCTGTAGCTGCTCCCACCCCCAACCCAGCAGTCCCTGCTGCTTTCCCGTGTGGCGGCTAACCTCCTAGCGCTGCTGTGTATATAAACACCTGTATCTACTGATGCCACTCGCTGCATTGTGTGCTATCTCAGTGACCTTTACTAGAGCTAGAGTATGTCTTGCCAGTGTAGAAGCCCCCTGTTTAATACAATCgctttgttgttttgcactCTTAACGGCTTCTCCAGAACAGATCTTCACCTAAAAAAGATGTCAAGTCAAGAGGGAGATGTAAAGCACATGTGAAGCAGatgttaaataaatagtttGATTACATGCTTTAGTGTAAAATGAAACATaaactgatcagccataacattagcaccacctCCTAATATTGTGTATTAAGTCCTTGCTACTATTCGGAGAATTTATTGAccaagaaaaccaaaaaaaaattaacagcaGGTGCTGTTAGCATGAGCATCAGTGATGCTTGGGTCCTGTGATCCTATTGCCGCTCCATCGGCTGGCCTTCCTTAATGGGGAACACTCCACAAGACACGCTTGATGTTCTGGAGATATTTTGAACCAATCGTTCAGCCATTACTGTTTAGTTATTTTCAGTTTGGAGTGTCTCAGatccttttcttttttggctttcttgctTCCACCATATGAACTTAAGAACAGAAAAAGCCtctgtagattaatataatcaatatatatattcccaAGTTCACTTGTcagtggtgctaatgttatggaTGTTTGGTGTATAGCACTATTAATATTgttgatttttcatttttgcattgGCTAATGCGCCGAGCATCAGTTAGCTGGTTAAATTATTTCCTGCACTTAAAAcccagacagagaaaaaaaagttctgaATTTGTCTGAAGATGACTCCAGATTTTAGGTTTCCTGAGGCCTCACAGCATCTCCATCGCATTCAAGATTACTATTAGATACCACATAACAATCAGCATGACGCTGGGAAACCTTTGAGAACCGCAGTTTGGTTCAGTTAATGGATCACAGTCTAGTGTAGGAAGGTGCATGGCATTGGCCCTATGGCATCTGTCCCTGTTCCTCTGGCCAGACTGTAAGTGGGGGGATTTAGTAGGGCCAGGATGCATGAGAGGCAGATTGAGCATTTAACTGTTTGGGAGCACGGATACGGGAGCATGCTACATTAGCAAAGCTTAGACTAGCATTAGCGCCACGCTAGCTGGGTTGACCAGGGAAAGGCTTTGGAATATAtctgaaatacatttttccatGGAAAAGGACTTGAACAGAGGTTATAGTGAAAGACTTTCTGTGAAAAGGACATTATCCGACGAGAGAAGACTGGTCTTCCTGAAGCTAtttttttgatgtgtttttctttcagaCAAATGGAGTCAATGGATATTCTTGGAAATGTTATGGGATTTTTTATCATATCAGAGCCTTATTAAGGGTATGTTGGAAACATGGTGACGAGTTCATATCATTCATTGTTTTCAttgattttgtatttaatttggttttatttcagtttttacaTAAGAGGACCTTCTTGAGAGAATGGAAGAGTTTGGGTGTAAAATCTTGAACATTAATCTTGACGTTATTGTTTATTGGCCTCTTTATTGAGTGCATCTTGACTGTTGAGCAGGCAGTCTCACAGTATAAGCTCTTGGACACGTCTGGtcatgtacagtgtgtgtatatatattcttttgaGCATGTGTGTTGCTATCTATGTATATGCTATTAACATGATATTGTGTTTTGACCTAACATAGCGTTTGATAATACTAGCTCTACCCCTCCTTGTCATTAGATATCTTACAGtgaagagagtaaaaaaaaaaacattcctctAAAGGTGATTGCGAGATTGTAGAAAAATGTTTAGGAACATGATTTCAAAATCTTACATTTGCCTCTTCTAACAGCCAGGGAATGGTGTGTGCTAAATGCAAAGGTGGCAGATCCAGATCCAAAATCCTAGAGTGAATTTTTCGTTCTAGATCTGGAATTGCCATCtcaagctacaaaaaaaaaaattaggctaCACACAGCACAGGTTTTCTCTTAACACAGACAGCACAACATACACCTTAACCTGCCACATCTGTAAATCAGTGTCATTCCGAAGTATACCTCTAAATAGCTTAAATCCACAAAGTCAAggtagcttttttttaagtggtggCTATTGGTTATCTGGTACTCTCAGTGATGTGTAAGTGGCTGATTGGGTTATTTTAAGCTGTATGAAGGaaactaaaacattttcacGCGTGATCAAGTCAGTCTTGTGAGTTTACTGTTTCTGTCGCACAGCCGAAATACAGGCGCAAACTCATTTGGGGCACACTGATACCCTCTCTTAAAGACCACAGATAAGCTGGCCCAAAGAAGGCTCTGAACAACAAAGTCAATTATGCTATACAGCACCGGGTGCTATGAGAAAACCTAATGGATCAATACTGAATATCTCTAATAGCAACTGAAGCATATTTAGATTTTGTGTTTAGATACACTGTAGAGATTCTCACATTGCCATTCTTCACAAAGGTCTTCACATATCTTAGCTTTTACAAGGATCTTCAATCGTTAAGTGTTTCAGAGTAAGAGAAGCTTTAAGATTAGGCATCCTTCTAACTACTTGTAGATGGTTCTTTTGGGAATTAAAAGTTGGatcttcaacaaaaaaaaacatttctggtCAATTTGGCGCCAATATTTATGTAGACCCTCGTTCTGTTAAGAGGTTCTGAAAGAAAGAAACGATTCTGCTTGATTAAAGGGGCTCAGATCTTATTCCTTTTTCAAATACATTACAAATCGTTAAGAAACATTGTTTAGAACATTGTTTCATACTATTAGTTACATCCAGAACTCTAAAATCCACACAAGCAACCTTTAAAACGTGTTTCTTAATCACACTGTTTTAAAGAGTGAACCCGATCAAGTGCTACTCTTACTCAAACACACTTAATGACTGTAGGTCTGCTCTGAATTTTAGACTGTACAGGAAAtcaaaatgtagaaaaacagacagactgtACAAATCATGTtcaccatttctcactcacccatcactttgttttatgttttctcaTTTGACTCGGGTCTCCCATTGACCAACCAGTTGGAACCACTCCACATGGGAGAATGACAGCTGGATATGTCTATAGTCCCATTGACCCTTAAAACTATGACTCTGTCTCAAtgagattaatttatttttgtatttatttattaaaacaaattaaaccaaAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282178 lncRNA downstream 59512 25317002 ~ 25352674 (-) False G207903
TU282155 lncRNA downstream 112494 25279365 ~ 25299692 (-) True G207886
TU282150 lncRNA downstream 152352 25258840 ~ 25259834 (-) False usb1
TU282131 lncRNA downstream 218513 25191237 ~ 25193673 (-) True G207874
TU282138 lncRNA downstream 245508 25153628 ~ 25166678 (-) True G207881
TU282214 lncRNA upstream 12450 25464541 ~ 25467095 (-) True G207934
TU282218 lncRNA upstream 102156 25554247 ~ 25557367 (-) True G207938
TU282201 lncRNA upstream 123977 25576068 ~ 25582312 (-) True G207924
TU282227 lncRNA upstream 140540 25592631 ~ 25733304 (-) False G207940
TU282233 lncRNA upstream 174823 25626914 ~ 25679875 (-) False G207940
XM_015602397.2 mRNA downstream 134426 25270141 ~ 25277760 (-) True ccdc113
XM_022683873.1 mRNA downstream 152019 25251235 ~ 25260167 (-) True usb1
XM_022683874.1 mRNA downstream 152019 25251932 ~ 25260167 (-) False usb1
XM_022683875.1 mRNA downstream 152019 25254424 ~ 25260167 (-) False usb1
XM_022683871.1 mRNA downstream 181175 25212565 ~ 25231011 (-) True drc7
XM_022683882.1 mRNA upstream 44210 25496301 ~ 25572271 (-) True znrf1
XM_022683890.1 mRNA upstream 229139 25681230 ~ 25685611 (-) True LOC103040521
XM_022683893.1 mRNA upstream 470490 25922581 ~ 25933202 (-) False LOC111195756
XM_022684337.1 mRNA upstream 537473 25989564 ~ 25992281 (-) False LOC111195825
XM_022683900.1 mRNA upstream 631073 26083164 ~ 26085641 (-) False LOC111195762
TU282177 other downstream 90561 25317002 ~ 25321625 (-) True G207903
TU281979 other downstream 463335 24948131 ~ 24948851 (-) True G207772
TU281888 other downstream 883119 24524734 ~ 24529067 (-) True G207707
XR_002651784.1 other downstream 1391872 23956346 ~ 24020314 (-) False dnajc24
TU282224 other upstream 196533 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 203886 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 251375 25703466 ~ 25708310 (-) False G207940
TU282294 other upstream 467129 25919220 ~ 25938032 (-) True LOC111195756
TU282304 other upstream 537347 25989438 ~ 25992494 (-) True LOC111195825

Expression Profile