RNA id: XM_022683858.1


Basic Information

Item Value
RNA id XM_022683858.1
length 1396
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC111195752
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24779413 ~ 24788023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGAAGCTCCAGAAGGCTCCAGACAGTGTGTCACTCTGAGGACGTGTGATGGGAATTTTTTGGGAATCGTTCCGGAACGCTGCTGGTGGTTGGGTGAGGAATGTGTGTGCTGGATGTTGATGATGGGTCAGACTCAGAGCGAGGATGATGATGAAGTAGATCTGGTTCAGATTCAGACCCTCTACACCGCCTTCATGAAGCAGTGTCCCAGCGGAGCTCTGCATCTCCACGAATTCCGGAACATCTTCGGGGTACAGAGCTCCTCAGAGGAGGAGGCTCTTTTTATGGAGTTAATATTTAAATCGTTTGATCGAAACAAGGATAATATATTAGACTTTGTGGAGTTTGTGGCTGCAGTCCATCTGGTGCTCAGAGGGAAACTGGAGGACAGACTCAAATGGTCTTTTAAAGTCTATGACAAAGATGAGAACGGAAAACTGGACAGAACTGAAGTCAGGCATATTATCACAattatttttaaacttaagAAAATAAACATAGACATGACCCCCGGGGAAGTGTGCGACAGGATATTCGATCTACTGGACCAAAATAAAGACGGTCAGATATCGCTGGCTGAGTTCATCGAGGGGGCTCAGAAGGACGCCTGGATCATGGATTTACTCAAACTAGATTTTGACGCAAGCAGGTGGTTTAAAGAACACTGGAACAAAAAGACATGACAAGAACATCTCCTAATAAAAACTCATCTGCCTTAAAATCTCTTCTGAAGACTCCAGTGGACAGCCTAAAGATGGAGCCAGTTTTCCTGGTGTTTACTGGAAGTAGTGTTGGATACAACACGTGACTACTGCCTGGTGCTGCGTAGCCAGTTCTGCACTGATCAGGTCAGAGCCAATCTGCGAACTTGTGCACTACTGTTACCCAGAATGAACCAGCAGGACTCAAAGAGTGATGGATCACAAAGAGCCTGGAGCACAGCAGTATAAGGAGTGAAGCACTAACTCATTGGCAGCTGACTcacaaaaacactgtttttaacacggttttaaccttaaaatattggCCTAATTATTGAGTAATTCACATGAATTATCACATGATAGTAGGCCTTAAAGGTCTTAAAATCACTACCTGGACAAGACGCCTTGAGAGTAAAGGTTAAAGGTGAACTTCAGTCTTTCAACTTAATCTCCAACAGCTACATCTCCATCTTAACTATACTATCAATTATCATGAATAATAGTTTCAACCTCACATTTTACCGAAGAACAGAAAATCTAATAATCATTTATGGAGCGTTTTAAGGTGACATTTGACATGCACATATTGAGTATGTGACTTTGGTTGGGGGGTGGATTTGTTGTGGTTTTAAAACCTATTTACCACCATGTTATTTTACCTAATAAAACATACtgattttcttttaacaa

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281887 lncRNA downstream 201807 24530725 ~ 24577606 (-) True G207706
TU281885 lncRNA downstream 258664 24517463 ~ 24520749 (-) True G207705
TU281881 lncRNA downstream 271470 24506149 ~ 24507943 (-) True G207702
TU281861 lncRNA downstream 282749 24443276 ~ 24496664 (-) True G207692
TU281968 lncRNA upstream 24631 24812654 ~ 24812952 (-) True G207763
TU281973 lncRNA upstream 103710 24891733 ~ 24892263 (-) True G207767
TU281975 lncRNA upstream 109279 24897302 ~ 24946528 (-) True G207768
TU281974 lncRNA upstream 157941 24945964 ~ 24946528 (-) False G207768
TU281993 lncRNA upstream 174549 24962572 ~ 25045617 (-) True G207781
XM_022683856.1 mRNA downstream 5262 24757394 ~ 24774151 (-) False LOC103042272
XM_022683857.1 mRNA downstream 7112 24757231 ~ 24772301 (-) True LOC103042272
XM_022683850.1 mRNA downstream 32417 24532648 ~ 24746996 (-) False LOC103031505
XM_022683851.1 mRNA downstream 32417 24532648 ~ 24746996 (-) True LOC103031505
XM_022683852.1 mRNA downstream 32417 24532648 ~ 24746996 (-) False LOC103031505
XM_022683859.1 mRNA upstream 25307 24813330 ~ 24830963 (-) True LOC103044011
XM_022683862.1 mRNA upstream 116547 24904570 ~ 24910773 (-) False LOC103042358
XM_022683861.1 mRNA upstream 116547 24904570 ~ 24910773 (-) True LOC103042358
XM_007237101.3 mRNA upstream 355968 25143991 ~ 25150989 (-) True c24h11orf49
XM_022683871.1 mRNA upstream 424542 25212565 ~ 25231011 (-) True drc7
TU281888 other downstream 250346 24524734 ~ 24529067 (-) True G207707
XR_452612.3 other downstream 759099 23938925 ~ 24020314 (-) False dnajc24
TU281979 other upstream 160108 24948131 ~ 24948851 (-) True G207772
TU282177 other upstream 528979 25317002 ~ 25321625 (-) True G207903
TU282224 other upstream 860601 25648624 ~ 25708310 (-) False G207940
TU282223 other upstream 867954 25655977 ~ 25708310 (-) False G207940
TU282220 other upstream 915443 25703466 ~ 25708310 (-) False G207940

Expression Profile