RNA id: TU48628


Basic Information

Item Value
RNA id TU48628
length 2398
lncRNA type inter_gene
GC content 0.34
exon number 6
gene id G36129
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13216784 ~ 13278356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttactttatggattacttgattttaaaagtgactaagttactttattagttaattTCAACAGTTTCAGCTGTTGTTAATTTGGTGTGGTTGTGGCCGACAACAAACCAGTTGTACCAGAAATACTGGGCATTTAGTGTAGCCTGCTTGGTCATtacatgaaaataaaacatgtggccgtgctaaaacaacaaaaataacgTGCTGCTGCAACACCTAGGTGACTAGACACCcacactacaattcccagaataCAGTACGTTTTAACGCGTTCAATATCTAGAATATCtttttactaagaaaaatggcaaaaaggtaacacacagtgacttggataagtaactttaatctgattactggattggactggaacagcaaatttacaccgTTAAACAAGCTGCACATGGACTATTTAACATTGTATCAAGTAACATATCTTCAGTGaaatcctgtaaaaaaaaagagatacaataaaaaaaaaagtgtactcACTTTTATAAGATAACTGTGGTGATGTACTTCATCACCAAGCCCATCCACAAGGAACCCTTCTTCATCACCAACCCCACCAATGCCTACAGCACTgtcagtctcttatttttctacCACATTCTGGCGTGCCCTTCACAATTACTGGCATTTACACAATCAACATGCACAGAAGAGACTGCATAACAttcatttcattgtttattGTTCATTGTCAATTATTTTCTGATAGACAAAACAAGCCAAGCACCATGGGAATGTTATAtaagaatattaaaataattggcAGTATGCCATTACTGTAAAATCAAAATTTGCTCGAAAACCCTAAAGTACTCAATTAGACTAAAAAATACCTCTGAGAGCCTCATCTGCTCTGATTATATTTTTCAGCTGcttccacccacacacacactctatagaAACCTCTCTCTGACATTTTGATTACAGACATCCAGACATTATAACCACTGTGCTTCTGTTAGACAAATTCATCAGGTTGCCTCAAGGTTACCCATCAAAAAGCTGTACATACAAACAGTAATGGAAATCATTCTAAAAATACTTTATCCTGTTCAGCCTGTACATAGAGAATCAGCTAAAACATGACAAGacatttcattgtttcatgtctTCTTCAGGAAGATgcttcttttaaaatataaaaaataataataaataaacagcttaATGGACTAGATTGTTATGGAATTGCACATCATCAAACAATGCAacaggattttaatgttaaaatgttaatagacatgattaatgacatttttaataattatgcaGTTTTCTCACAAAACaactaaaacattttcacacacaagTGTAATAGGAAATGCATTACATTATGAAAgtgtgtgaaaaagagagagagttaaaattTTGGCATATTCAATTAGTAATAtgtgtcataataataataaaaatgtgtcaaaaaataataatttatttatctattatctccccagaaggagagagagagagagagagagagagttaaaatgGTGGCATATTCAATTAGtagaatttattcatttaatttaattcagtgcAGTCTTAATAAGTCAAGAATATCTTATATcccattcttttaaaaaaataataggaaAACATGAggttttatatatctattattcATCTCcaccttttaatttatttatctattatcccccagagagagaaagagagagaaaaaaagaaagcgagaaagagtaaatatttggacataattCATTAGTAAAATgtgctaatttaatttaattcaatttagtgCACTGTTAAGAAGTAAAGAATATAATATAtcccattatttttaaatttttgggTAAACAGGTGTTTTatctctgtatttatttatatccatcttttcatttatatttgaatatttgtttTCGCTCTCAGATAAATCTAAAAGTTGAACGAATCATTCTCTTTTATATTGTTCGAGAAACTTTTTCACCCAGGGGAATCTCCAttaatttCTGTTGCAGTCTGTTGTGATATGCctcatcatcctcctcttcctctttttcagaGTATATATGGTGTCTTTTACACGTATTGACTATTTCATCTTTATCCATCAGATCAGCAGGATCGAGAGAGTGGGCATTGATCAGACTGACCAGGTACTCCCGGTAGTGTTTATCGCAAAGCCCTGCATGGCCTTCCTCGACTTGAATTCCACATGCATCATCCAACGCCTGCCCACCTTCTTTCTGCTCCATCACTCCACACAAACCATTTCCTGTCCCATCAGGGTGATCGGTATTAAATTCCACTTTGTGtttCTGTAGTAAGGCTTGCAGTCTGACTGGCTCCCAGTCCCTCAGGTAGTAGAGGCAGTCTCGTGGATGGTGGGCATGAAAACCCTTTGATATACACTGATTACCTGGACATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48604 lncRNA upstream 262073 12954411 ~ 12954711 (+) True G36106
TU48487 lncRNA upstream 379464 12835279 ~ 12837320 (+) True G36011
TU48480 lncRNA upstream 422580 12772988 ~ 12794204 (+) True G36004
TU48465 lncRNA upstream 519576 12696949 ~ 12697208 (+) True G35992
TU48425 lncRNA upstream 521168 12694830 ~ 12695616 (+) True G35972
TU48658 lncRNA downstream 28737 13307093 ~ 13311608 (+) True G36146
TU48666 lncRNA downstream 44818 13323174 ~ 13325570 (+) True G36154
TU48669 lncRNA downstream 47579 13325935 ~ 13336434 (+) True G36155
TU48680 lncRNA downstream 114289 13392645 ~ 13394580 (+) True G36166
TU48694 lncRNA downstream 195798 13474154 ~ 13474794 (+) True G36177
XM_007248745.3 mRNA upstream 207111 12991143 ~ 13009673 (+) True pmp22
XM_007248744.2 mRNA upstream 240764 12964782 ~ 12976020 (+) True tekt3
XM_022669128.1 mRNA upstream 385465 12717653 ~ 12831319 (+) False LOC103024023
XM_022669124.1 mRNA upstream 385465 12717653 ~ 12831319 (+) False LOC103024023
XM_022669125.1 mRNA upstream 385465 12717653 ~ 12831319 (+) False LOC103024023
XM_022669132.1 mRNA downstream 19192 13297548 ~ 13305858 (+) True psme2
XM_007260019.3 mRNA downstream 74499 13352855 ~ 13359288 (+) True LOC103038526
XM_022669136.1 mRNA downstream 144681 13423037 ~ 13459971 (+) True heatr1
XM_022669141.1 mRNA downstream 182295 13460651 ~ 13471964 (+) True arg1
XM_022669146.1 mRNA downstream 222691 13501047 ~ 13508892 (+) True nudt13
TU48468 other upstream 513728 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 650813 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 845822 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1414580 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2214979 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 1184781 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1511024 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2154475 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3722026 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3722026 17000382 ~ 17018884 (+) False sun1

Expression Profile