RNA id: TU48695


Basic Information

Item Value
RNA id TU48695
length 1050
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC103039668
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13502246 ~ 13520702 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgcaaaaaaaaaagttcttGCAGCAGTGCCATAAAAGAACCATTTTtgattccttaaaaaaaaacataataatataaaaacaagctAAAGCTCCTAAAGGTTTAAAGAAACTTCACTGAGTGTGGCTTACCAGGCATCAGTATTGGATAAACAGATTATATTATTGTATCTCTGCCTGTTTGGTTTACAAGAGTTTGCCCCACCCATTTCACACTGATGTTATAAAGTGTGAAAGCCTATGTTGCAGGTTTAGTTAGCCAGTCAAAACATTTGTtgtgaaaaaacaaaattataactgtttttgtttcatAACCCCAAACGTCAAAAGCACAATTCCAATGCTATCCCACAAAATGAATTTAAGGGTTCTATATAcattatgtatacatttttttttaacattcatacGTCATTATCTAAAGAATCAATCATCAACcgtcaaaaagtttttttttttttaagttatcaGAAGTGGTTCTTTTTCTGTGAGAGTGTTGCTGCCTCGGACTCAAGTTTTCCATGATGGTGATAATGCTGTAGCATTCTGCACTAGCGCGGATACTCCTCAATCCAGAAACACAGAAATTTGTGAATTTCTGACAGACATTAACAGAACTTAGAATTAACAGATGTGCACAATCTacataaatgctattttttaagaTGTTTCTGATTTTACTCTTTGCCTGAACCACCCAAAGAACTATTTTTGCTGTAGGAAAATAAGGCTGAAGATGAACACAGTACCTGCTATGAACCTCCAAACACTGGGCCACTGGAAAATGCAGCACAATAGACTGGTGCCTGCCTGTGGTGATGGATTTTTTTGAGGCCAAAGCAAAGCTTTTGTAACAAAATACAAAGCTGTTAAACTCTGCTCACATGTTCTCTCTTCgctaaaacaatgtaaaagaTTGAGGAATACCTCCCTCCTCAGGCTGATTATAGCTGTTTGAGGTTCACACTAGTTGTGCTTCCCAGTGGCTCTCGCTGTTTCttgattttgaaataaaaatgttatgctgttggtttggtttttaatgacTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48692 lncRNA upstream 24307 13475141 ~ 13477939 (+) True G36175
TU48694 lncRNA upstream 27452 13474154 ~ 13474794 (+) True G36177
TU48680 lncRNA upstream 107666 13392645 ~ 13394580 (+) True G36166
TU48669 lncRNA upstream 165812 13325935 ~ 13336434 (+) True G36155
TU48666 lncRNA upstream 176676 13323174 ~ 13325570 (+) True G36154
TU48783 lncRNA downstream 40568 13561128 ~ 13564733 (+) True G36244
TU48816 lncRNA downstream 141870 13662430 ~ 13662847 (+) True G36273
TU48819 lncRNA downstream 156253 13676813 ~ 13677131 (+) True G36276
TU48847 lncRNA downstream 289182 13809742 ~ 13810238 (+) True G36298
TU48848 lncRNA downstream 289182 13809742 ~ 13810182 (+) False G36298
XM_022669141.1 mRNA upstream 30282 13460651 ~ 13471964 (+) True arg1
XM_022669136.1 mRNA upstream 42275 13423037 ~ 13459971 (+) True heatr1
XM_007260019.3 mRNA upstream 142958 13352855 ~ 13359288 (+) True LOC103038526
XM_022669132.1 mRNA upstream 196388 13297548 ~ 13305858 (+) True psme2
XM_007248745.3 mRNA upstream 492573 12991143 ~ 13009673 (+) True pmp22
XM_007260024.3 mRNA downstream 5203 13525763 ~ 13630014 (+) True ccser2
XM_007260025.3 mRNA downstream 5203 13525763 ~ 13630014 (+) False ccser2
XM_007260026.3 mRNA downstream 5203 13525763 ~ 13624712 (+) False ccser2
XM_007260027.2 mRNA downstream 5203 13525763 ~ 13624674 (+) False ccser2
XM_022669156.1 mRNA downstream 1044365 14564925 ~ 14567161 (+) True LOC107197918
TU48468 other upstream 799190 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 936275 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 1131284 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1700042 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2500441 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 942577 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1268820 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 1912271 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3479822 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3479822 17000382 ~ 17018884 (+) False sun1

Expression Profile