RNA id: TU40214


Basic Information

Item Value
RNA id TU40214
length 872
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G30001
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61908703 ~ 61917427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgttgtagaaaagaaaatgaaaggtgggctactcccacctctcgtccggggtacaacttcccctgcgtgttcgtttgatagagagagtcagacaggtggagtgaagctgaaagcaaaccaagtatttattacaaagtactgaatattcaggagaaccaatacatatAAGACAGTGTTACAGCCGTCTCAGTAAGAGTTCtgaccccctctgatctgactccatgttttatacccaaaatgacgtaagcctgttgatgaggcgttgttaaaatcatctcatgttagcatgcacgTGTTAATACTgaagtttcacgtgtctgactggaccactagtgtttgaccttgactgtattcttccagaatggaacctcatggcactatctgtgtgtgtgcgtcaccccccgctttgaagtagaggttttttagggaggcactcactgaccaaaaggctgctttgatctaatagcctttttgtagcaaattagccccgtaccagtcgaattgatgaccgttagttagggtcatgcagtaaaacaaaatacttcaagcctgagctacatctcatatgttatatgttaatgtgggtTAATCTGTcatataataaagtctgtgttagtcacatgccatatcaaacaatgttttactatatgtgtaaaggatatattgtgattattggttaatcttttatataaatgcgtgtaaaatacactgtgagtaaaaatgatcaaatataatgtgagtattggttaatgcctataaaatacaaggtttcacacaataattatgtaattatagatactaagataagtaatcattattgaaagatatttgtcaatacactcaaggtaaaataaaccgTTACTCTTTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40118 lncRNA downstream 524869 61367275 ~ 61383834 (-) True G29937
TU40110 lncRNA downstream 543825 61292975 ~ 61364878 (-) False LOC103029720
TU40111 lncRNA downstream 580585 61307103 ~ 61328118 (-) True G29930
TU39972 lncRNA downstream 1015652 60892696 ~ 60893051 (-) True G29819
TU39956 lncRNA downstream 1114912 60792776 ~ 60793791 (-) True G29803
TU40228 lncRNA upstream 19303 61936730 ~ 61937164 (-) True G30011
TU40231 lncRNA upstream 32990 61950417 ~ 61979462 (-) True G30014
TU40241 lncRNA upstream 44323 61961750 ~ 61966803 (-) True G30017
TU40247 lncRNA upstream 53122 61970549 ~ 61973807 (-) True G30020
TU40249 lncRNA upstream 62136 61979563 ~ 61983551 (-) True G30021
XM_022664110.1 mRNA downstream 17974 61831841 ~ 61890729 (-) True LOC103043586
XM_022664115.1 mRNA downstream 17976 61831841 ~ 61890727 (-) False LOC103043586
XM_022664157.1 mRNA downstream 17977 61831841 ~ 61890726 (-) False LOC103043586
XM_022664137.1 mRNA downstream 17989 61831841 ~ 61890714 (-) False LOC103043586
XM_022664143.1 mRNA downstream 17990 61831841 ~ 61890713 (-) False LOC103043586
XM_022664198.1 mRNA upstream 78926 61996353 ~ 62008626 (-) True LOC103031530
XM_015601215.2 mRNA upstream 92380 62009807 ~ 62039839 (-) False LOC103031849
XM_022664205.1 mRNA upstream 92380 62009807 ~ 62025657 (-) True LOC103031849
XM_007233017.3 mRNA upstream 129264 62046691 ~ 62057863 (-) True LOC103030167
XM_022668152.1 mRNA upstream 295733 62213160 ~ 62214666 (-) False LOC111191939
XR_002649101.1 other downstream 20815 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 1539089 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 1746679 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 2470405 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 2973914 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 1292854 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 1292854 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 1292854 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 1412617 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 1516365 63433792 ~ 63465756 (-) False usp46