RNA id: TU40118


Basic Information

Item Value
RNA id TU40118
length 1145
lncRNA type sense_over
GC content 0.28
exon number 2
gene id G29937
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61367275 ~ 61383834 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaataaaaaaaaaaataaaataaataaaacctgatGTCAtgagctatcacatgctgccaggagccaatagttgttttcttcagcaacacaaaataattttggataaattataatattgacGAGCACCGTCTCTGCGGGTGCAGTTATACACTACTCACACTACTACTTTCCTTCTCATAGTCTCAGAGCTGTTGTTGGTGTGTTTCGTTGCTTTTGTGGCAGCAGAGTCCTCATTATTATATCACTTGAATCATCTGTGAAGTACGATTGAAACTGATTTGCTGTCTTTTTGTTCTCTGACGATGTGAACTACGTAAGGCTTTAAGTATTTAAGGCTTTTgactatttaaaatgttcattaatGAAAGACGTTAAAAATGCCACTGTTCAGAACACCCATTCTCCTCCATACATGCCTTTCAAAATCTAGGTGTTGAGTTCAGAATTGGTGTCCAGGTTTGCCTTCTGTGAAACACGTTGGTTTTTATGGTTTGAACTGAGCGTTTAGTCTACAGAGGCCTCCTGAGCTTGGATCCCTCTCGCCATATCAGTTAAAACCTTTTCAATATGTTCAGAACATCAACGGAGGGTAACAGAATATAAGTATGCATAGTATACCTTTAATGAATCGTGTATATGGCACATACATACATGTTTGTGactgttttaacatttattgttttaacattaattattaaacatatgATTAACATAATATTGTATCTtaacgaaaaaaaaacaccaaaagcaTATGCATATGAAATCCGAACTGGATGTTTTCTCTTCTTAAGCCTCTTAATACTATTTTGGGCTATTAGTTTTATCACTGGGCACTTgatggagtgttttttttatatatatgtgttatgtTTTATATGTCCCACTTAAtcttattaatatttagttaggttttttttttttttttttccggagaGAATGAAATGAATTTCTGTTCTACACCAGTGCTTTTTATGCttgattttattgtaatttcaaCAGCGGAAAAATACTGTCTATGCTGTAAGTACTTTGTATACTTTGTATTcatttcttattgtttttcattaaatgtCTGCACTcgatgcatatatatatatatatttcaaatagaTAATATGAtttgataatatatatacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40110 lncRNA downstream 2397 61292975 ~ 61364878 (-) False LOC103029720
TU40111 lncRNA downstream 39157 61307103 ~ 61328118 (-) True G29930
TU39972 lncRNA downstream 474224 60892696 ~ 60893051 (-) True G29819
TU39956 lncRNA downstream 573484 60792776 ~ 60793791 (-) True G29803
TU39872 lncRNA downstream 841891 60520240 ~ 60525384 (-) True G29741
TU40213 lncRNA upstream 524869 61908703 ~ 61917427 (-) True G30001
TU40214 lncRNA upstream 524869 61908703 ~ 61917427 (-) False G30001
TU40228 lncRNA upstream 552896 61936730 ~ 61937164 (-) True G30011
TU40231 lncRNA upstream 566583 61950417 ~ 61979462 (-) True G30014
TU40241 lncRNA upstream 577916 61961750 ~ 61966803 (-) True G30017
XM_007230936.2 mRNA downstream 22243 61292876 ~ 61345032 (-) False LOC103029720
XM_007230935.2 mRNA downstream 22243 61292876 ~ 61345032 (-) True LOC103029720
XM_022664036.1 mRNA downstream 166052 61169502 ~ 61201223 (-) False LOC103028984
XM_022664042.1 mRNA downstream 174413 61169502 ~ 61192862 (-) True LOC103028984
XM_007230931.3 mRNA downstream 631424 60731202 ~ 60735851 (-) False btbd6
XM_007238744.3 mRNA upstream 323857 61707691 ~ 61815586 (-) False LOC103042845
XM_015602853.2 mRNA upstream 323857 61707691 ~ 61793630 (-) False LOC103042845
XM_007238745.3 mRNA upstream 323857 61707691 ~ 61778285 (-) False LOC103042845
XM_007238743.3 mRNA upstream 323857 61707691 ~ 61778285 (-) True LOC103042845
XM_022664110.1 mRNA upstream 448007 61831841 ~ 61890729 (-) True LOC103043586
XR_002649735.1 other downstream 997661 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 1205251 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 1928977 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 2432486 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 3192571 58169321 ~ 58174704 (-) False LOC111189852
XR_002649101.1 other upstream 449614 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 1826447 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 1826447 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 1826447 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 1946210 63330044 ~ 63334846 (-) True G30376

Expression Profile