RNA id: XM_007230935.2


Basic Information

Item Value
RNA id XM_007230935.2
length 5805
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC103029720
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61292876 ~ 61364878 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagaaggagagagagagggagagaagagggagagaagaggGCTGGAGCAGGAGAAGCACCGCGCCACACCACGCTCTccaaattgtgatttttttgcatgtcaGGAGCGGAGGAGGCTGTCGCCGGTCCTCGGCCGTGTCGTCTCTGTGTGCTCGGTCCATTTTAACGGGAGGCATGTGGAGCCGGGCGAGGAGAACCAGGTGGCTGTCTATAGCGTGCCTGCTGCTGTTAACGATATGGACGGAGGTGGGCCACTCTTCGGGCTATTTCGAGCTGCAGCTGATGAGCGTGGAGAATGTAAACGGTGAGTTGTGGGATGGGGAATGCTGCGACGGCGCGCGGAGCTCGCAGGACCAGCGTTGCACGCGGGACGAGTGCGACACGTACTTTAAAGTGTGCTTGAAGGAGTACCAGAGCGAGGTGACCACCACGGGCCAGTGCAATTTCGGTACCGGATCTACCGGCGTCCTGGGtggaaatatattttcttttaagaaCAGCAAGAGCAGCCCCGTCAAGATCAGCGAGGCGGGCAAGATCACCATCCCCTTCCAGTTTGCCTGGCCGCGATCCTACACACTCATCCTCGAGGCCTGGGACTGGGACAACACCACTCAAAACAGTGAGGAGCTTCTGATTGACCGACATGCTCACACGGGTATGGTGAACCCTGGGGACCACTGGCAGGTTATCGCACACCCGGGCGCCACTGCCCGCTTCGAGTACCGCATCCGTGTCAAGTGTGACGAGAACTACTACGGCAGCAAGTGCAACAAGCAGTGCCGACCTCGCGACGACTACTTCGGCCATTATCGCTGTGATCCTTCTGGAAACATCGTCTGTCTGGAGGGCTGGATGGGGCACGACTGTCGAACTGctatCTGTAAGCAGGGCTGTAATTTGATTCACGGAGGTTGCTCAGTGCCCGGGGAATGCACGTGTAACTACGGCTGGCAGGGTCAGTTCTGCGACGAGTGCCTGCCCTACCCGGGCTGCGTTCATGGCACTTGCGAAAACCCGTGGCAGTGTACCTGTGAGAAGAACTGGGGTGGACTACTGTGTGATAAAGATCTGAACTACTGTGGCACTCATCACCCCTGTGTGAACGGAGGTACCTGCATCAACTCTGAGCCAAATGAGTATAACTGTGCCTGTCCTGAAGGCTACTCGGGCAAGAACTGTGAAATAGCAGAGCATGCCTGCGTTTCCAACCCGTGTGCCAACGGTGGCACCTGTCACGAAGTTCCCTCTGGCTTTGAATGCCACTGTCCACCAGGCTGGGAGGGTCCCACCTGTGCTAAAGACATGGACGAGTGTGCTTCCAGTCCCTGTGCTCAGGGGGGGACGTGTATCGATCTGGAGAACGGCTTCGAGTGTCTCTGTCCTCCGCAGTGGGCTGGGAAGACCTGCAAGATTGATGTAAATGAGTGTGTGGGGAAGCCTTGTGTTAACGCTTACTCTTGCAAAAACTTGATTGGTGGATATCATTGTGACTGCTTTCAAGGATGGGCCGGACAGAACTGTGACATCAACATGAATGGCTGCCATGGACAATGCCAGAATGGAGCAACTTGCAAGGAAGGAGCACGAGGAGGCTATCACTGCCAGTGTGCCCCAGGCTTCACGGGCACCCACTGCGAGATCCAGAGGAACAAGTGTGCCAGCAGCCCCTGCCAGAACGCCGGCCAATGTCACGTGTTGCTGGACAGCTTTGTATGTGAATGTCTGCCTGGCTACATCGGAACGCTCTGCGAGATACCAAGCCATTCGAATCCTTGTGAACCCAACCCGTGTAAGAACGAGGCGTCCTGCCACAGCTTGCTGGGGGATTTCTACTGCGCCTGTCCTGAGGACTATGAGGGGAAGACCTGCGCAGACCGTAAAGACCACTGCAGGACTGCCCCCTGCCAAGTGATCGACAGCTGCACGATCGCGGTAGCGAGTAACAGCACAGACGGTGGTGTGAGACACATCTCATCCAACGTGTGCGGCCCTCACGGCCGCTGTGTCAGTCAGCCCACCGGAAACTTCACCTGCACCTGTGATCCAGGCTTCACTGGAACATACTGCCATGAGAATGTGAATGACTGTGTAAGTAGTCCCTGTCGGAATGGCGGCACCTGCATCGATGGCATCAACTCGTTCCAGTGTTTCTGTCCTGATGGCTGGGAGGGTGACCTCTGTGGTCTCAATGTGAACGAGTGCAGTAGAAACCCATGTAAGAATGGAGGACGCTGTGTGGACCAGGTCAACGACTTCTACTGCGAGTGCGCCAATGGCTGGAAAGGCAAGACGTGTCATTCGCGCGAGAGCCAGTGTGACGCCAGCACCTGCAGCAATGGAGGCACCTGCTACGACCATGGAGACACTTTTCGGTGCGCCTGCCCGTCTGGCTGGGGGGGAAGCACCTGCAACACAGCTAAGAACAGCACGTGTGCTTCTAGTCCGTGTGTTAATGGAGGAACCTGCGTGGGTGGAGGGGATACGTTCACCTGCATCTGTAAGGACGGCTGGGAGGGACCCACCTGCGCTCAGAACATCAACGACTGCAACCCTCACCCTTGCTATAACGGAGGAATCTGTGTGGATGGAGTGAACTGGTTCCGTTGCGAGTGCGCTCCAGGCTTTGCCGGGCCTGACTGCCGCATCAACATCGACGAGTGCCAGTCATCACCCTGCGCGTACGGAGCCACGTGCGTCGATGAGATCAACGGATTCCGCTGCATTTGTCCGCTCGGACGCTCTGGTCCTCGATGCCAAGAGTTTATAGGCATTGGGAAGTCGTGTCATTACACCGGACTGCAGTTCCCGCACGGCAGCCGCTGGGAGGAGGACTGTAATGCCTGCCAGTGTGTCAACGGCAAAGTAGAATGCACCAAGGTGGTGTGTGGCCGACGGCCTTGCCTGCTGCCAGGAACCCCCGGCAGAGAGCGTGCAGCCTGCCCTGGGGGTCGGGAGTGCCTGGAGCACAACTTCCTGACCTGCCTCTCTCCCCCCTGCCACCAGTGGGGCTTCTGTTCCAGCCCTGAGCCCGTCCCACCGGTCAACAGCAAGTGTGAGCCCAACACGGGCTACTTGGACAACAGTTGTGCCCACATCACACTCGTCTTCAACAGGGAGAAGCTGCCCATAGCAACGGCAGTGGAGAACGTGTGCTCGGAGCTGAGGTACCTACCCGCCACGCGGAACCTCGCCAAGGAGGACCCTCTGCTGGTTCTCTGTGAGCTTTCCTACTCCAACCAGGATGCAGTGGAGGTGGCCATTTCCTTCCAGCAGGACGAGCAGCCTGACCACAGTCGGATCCAGGAGGCGGCCAGCACCATCGTCAGCACTCTGTCCAAGCGCCACAACAGCACCATCATGCAGGCCGTCATTGAGGTCAGAGTGGAGACACGGCTCGTGCCCCAGCCAGTGGattatTTGGTGCCCGTGCTGTGTGTGATCTTCTGCGCCTTGTGGATCTTCTGCGTGATCGTGTGCGTGTGGTGGACGCGTAAGCGGCGAAAAGAGCGCGAGAGGCGCGAGCGTGCCCCAGTTGAGGAGAGCGTGAACAACCAGTGGGAGCCGCTGCGGCCGGTGGCCCGCCAACAGCACAAGGACAACCGGGACGCCGAGTATGAGCGGGCCAAGCTCATGGGCTCCCCGGACCGGGCGCACGGAGAGGGGGACGAGGAGCccgaagaggaggaggaggaggaggaagacgaGCTGGAGTTGGTGGAGGAGTGGCGGTGCGGGACAGAGGGCGGCAAGCGGCCCGTCCCAAAGTACTCTAAGGCCACGGTGCGGCTCAACAGCGAGCTGATCTGCACCACgcgcagcagcggcagcagcgggGGCGCGCCCCTCAAAGCCCCCCACCGGACCGCCCACAGCCCCAAAGACAACCGCTGGAAAAACGTCAACAGCACCTCTGCTGGCCAAGACGCCAAAGAGCTCTGTGTATAGACACTGGGAACGacgcgcagagagagagagagtagttcTCTTGTTCAgcggaagaagaaaaaaacaaaggctTTTGAGAGACGGAGAACTttcgtttttttctctttctttttcactttatttttatttccccaTGGtgagatgtttttgttttttttttctttccttgacacatttttatttttatatgtacagATGAAgcagatttttgtgttttactttGTAAGAATAAGGCAAAAGAGACGCccgcttagtttttttttgttgttgttgttttgcaaAAATGTACTGCTGAAAACAAAGAGCAGGAAAAATACACTCACTAGAGGAAtactataaactgtataaagactttcttttgttgtttacagatgattgtggttttattttattgtatgcgGCCCGTGTTTTCAGCACAGACCTTGCATATGGTGGCCAGTGAGGTGCACTGGCTATGGGGTCAGAAGCGAGAACTTTGactcttgtgttttttgtttttttttgttttgttgtttttcttcccCCCATCCACCTCTTCTCCACCTCTTCTCCACCTCTCCTCACTCCACGCCTGCCTTACTAAGCTTGTGGGTCAGTGCCTGCGAAGTGGCCTTGTTTTTTCTGTCACGTCTGTTTGTCTTGGCTGAATGctctttaatgaaaaaaaaaaaaaaggattgcagtattttgagttGGTAGCAAGTGCCTTCTGACGAGCCCGTTTGTTTGCGTCTCTCGCTGCCGAGGTCGACCCCAGATAGATCACTACAAAGGGAGAGGCTGGTCAAGAGCAACTCCCGCTTTACCACCGAGGTATTTGATCAAAGAAAGACAAGAAATCtgtaaatatgtgtatatagtAAAGGAGTCGCTGTGTATATTTGAATTTAGTAACTTAAGACAAGTCacacttttttattactattataattatgattgaaattattattattattattatgattattattatattatttttcattttattttttttttattattattattattttttttttttacaacgcCATTCCTTTTATTTATGCCAGTTGAAACAGGCAGGTTTTATAACAAGTATACAGCGTCCCACAGTCAGAACAGTAATGTAATCAGTAACAGGTCATCTTTTTTatgttgttggtttgttttcactttATAAGGCAAGTAATTCTTTAAAGATTGTGTGGTGTATCGTGGCGTGTGTGTTTGCCTCCGTTTCAAACCAGTTCCTATCATCTCCTTCAGCTTCTGTCCTTCCTCACTGTCATAGAATGTTCTGGAAACCTGTGGAAAGCTCCTGCAGCGTGTGCGGAGGCCGGCAGGCTGGTTAGGATCCCGGTCTCTGCAGACGATGTAAAACTCTGTTCTTGCTCCATCTGCTTTTTTTCCTGCTGTTTTTGGGTTGAGGCTTCATGAAGGGAACAATTTTGTTGTAAAGCATTTGTGTTCGAGGTAccaactccaaaaaaaaaatggattaccTCAGAAGTGGTTCACtatgatttttgttttctttcgtTTTCATGTTGGATATTGCTCTCACGGTGGCTTCTTGCTGCCGTATGTGAGAggatgcaaaataaaaagaatttaaatattatcCTGAAGTAATCTGAACAAgtggtaaaataacaaaaaacgaGATAACGCTGGATGTGCATTACTGGAAGGAATAAGGTGGGGTCagaggaagttttttttttttttttaaaggaaattaaacaaagtctttttttgtacAGAAGAATTGCTCTGCAAACGTTTTTGGTTCATTTAGTGGAATTTATGTTTGttcttagaaataaatctaactatttattaaagcattttataaCAATCTCctcaaaaaaa

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0048793 pronephros development biological_process
GO:0031016 pancreas development biological_process
GO:0001889 liver development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K21635 JAG2; jagged-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39972 lncRNA downstream 399825 60892696 ~ 60893051 (-) True G29819
TU39956 lncRNA downstream 499085 60792776 ~ 60793791 (-) True G29803
TU39872 lncRNA downstream 767492 60520240 ~ 60525384 (-) True G29741
TU39878 lncRNA downstream 767492 60520240 ~ 60525384 (-) False G29741
TU39849 lncRNA downstream 791684 60498211 ~ 60501192 (-) True G29724
TU40118 lncRNA upstream 22243 61367275 ~ 61383834 (-) True G29937
TU40213 lncRNA upstream 563671 61908703 ~ 61917427 (-) True G30001
TU40214 lncRNA upstream 563671 61908703 ~ 61917427 (-) False G30001
TU40228 lncRNA upstream 591698 61936730 ~ 61937164 (-) True G30011
TU40231 lncRNA upstream 605385 61950417 ~ 61979462 (-) True G30014
XM_022664036.1 mRNA downstream 91653 61169502 ~ 61201223 (-) False LOC103028984
XM_022664042.1 mRNA downstream 100014 61169502 ~ 61192862 (-) True LOC103028984
XM_007230931.3 mRNA downstream 557025 60731202 ~ 60735851 (-) False btbd6
XM_007230930.3 mRNA downstream 558841 60731202 ~ 60734035 (-) False btbd6
XM_007230927.3 mRNA downstream 558841 60731202 ~ 60734035 (-) True btbd6
XM_007230937.3 mRNA upstream 24963 61369995 ~ 61430279 (-) True nudt14
XM_007238744.3 mRNA upstream 362659 61707691 ~ 61815586 (-) False LOC103042845
XM_015602853.2 mRNA upstream 362659 61707691 ~ 61793630 (-) False LOC103042845
XM_007238745.3 mRNA upstream 362659 61707691 ~ 61778285 (-) False LOC103042845
XM_007238743.3 mRNA upstream 362659 61707691 ~ 61778285 (-) True LOC103042845
XR_002649735.1 other downstream 923262 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 1130852 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 1854578 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 2358087 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 3118172 58169321 ~ 58174704 (-) False LOC111189852
XR_002649101.1 other upstream 488416 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 1865249 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 1865249 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 1865249 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 1985012 63330044 ~ 63334846 (-) True G30376

Expression Profile