RNA id: XM_022664042.1


Basic Information

Item Value
RNA id XM_022664042.1
length 2755
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC103028984
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61169502 ~ 61201223 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatatagggtattttaagctgaatgaaAGGTGAACTCTTGTGCTGGGGGGCacagaagtaaacaaaacttctTTCAGTCTAACAAGCACTGGACTTTgatctaaacagatttctctcctgatcACATTTTCTCGTCGTGTTCTCgtcaaaatgttttaataaacagtgataatggaacaaCGGTATAATCACGACAACACACtggagGTAAAAGAAGTATTGATGAAGATGCAGTAGTCCTCCAGACAGTCTGATTGTTTCTGCGGTGATAAGCATCGGTTTCTCCTGGTCTCAGTGCTCATGGTCCTGCTCCGGTAATGTTCTAGCCCTGCCAGGCTTTAATTGAACATCATGTCTAAATCTCCCGAGAAAAACTCTcctctgctgcagctgcaggagGCAGACTCCAGCAGGGTGGGCAGCCGGGTGCTCTCCCCCCTCTTTAACACCTCCTCCTCTCCTGTCCTGCCCATGGAGAGCCACCCCATCTGCATCCCCTCGCCCTACACGGACCTGGGCCATGACTTCACCACCCTGCCCTTCTACAGTCCCACTCTGCTGGGCTACAGCGGCACATCCCTCTCCGACTGCCCGTCAGCACGGCAGTCTCTCAGCCCCACCCTCTTCTGGCCCTCTCACAACCACGTGTCCACTCTGTCTCTGCATCGCCCACAGACCCACACCCAGCACAACCAGCTCAGCAGCGGAGCCTGGCAGGAACTCATATCCCACGACTACATAGCTGAGGAGAACAGCAAACCAATAGGGAAAAGGTCAGCGGAGTGTGAGGAGAACTTCCGCTCTGTGGAGAGTAAATCTGACATGCACTTCTGCGCCGTGTGCAGCGACTACGCCTCTGGCTACCATTACGGTGTCTGGTCCTGTGAGGGATGCAAAGCCTTCTTTAAAAGAAGCATACAAGGTCATAATGACTACATTTGCCCTGCGACCAACCAGTGCACCATTGATAAGAACCGACGCAAGAGCTGCCAGGCCTGTCGGCTTCGCAAGTGTTACGAAGTGGGAATGATGAAATGCGgtacGAGAAGAGACCGTGGCAGCTACAGTCGTGGGGGCCCACAGCAGAAGAGAGGGGTGCGGTTACCTGCCAGAGCAGTGGTGGGCAGTCACAGACAAGCAGAGCGAAAAGGAGCCCTGCCCCTCAGGGTGAAGGACGTTTTACCTGCAACTCTGAGCCCAGAGGAGCTCATAACCCGAATCACGGAGGCAGAACCACCAGACATTTATCTGATGAAGGACATAAAGAAACCCTTTACTGAGGCAAACATCATGATGTCGCTCACAAACCTGGCTGACAAAGAACTCGTCCACATGATCAGCTGGGCCAAGAAGATCccagGTTTTGTGGAACTCGGCCTCTTTGACCAGGTCCACCTGCTGGAATGCTGCTGGTTAGAGGTGCTGATGCTGGGGCTGATGTGGAGATCTGTTAATTATCCTGGGAAGCTCATCTTTTCCCCTGATCTCATTCTCAGCAGGGATGAAAGCAGCTGTGTGCAAGGATTTGTGGAGATTTTTGACATGCTCCTGGCAGCCACGTCCCGATTCAGAGAGCTGAAGCTGCAGAAGGAGGAGTACGTCTGCCTCAAGGCCATGATCCTCCTCAACTCCAATATGTGTCTGAGTTCGGCTGAAGGAGGAGAAGAGCTGCAGAGCAGGACCAAGCTGCTTCAGCTGCTGGATTCTGTGACTGATGCACTAGTGTGGGCCATCTCAAAAACAGGCCTGAGCTTTCAGCAGCGGTCCGCACGCCTCGCCCACCTGCTCATGCTGCTCTCGCACATACGCCACGTCAGtAACAGAGGGATGGACCACCTGCACTGCatgaagatgaagaagatggtTCCGCTGTATGACCTGCTCCTGGAGATGCTGGACGCTCACATCATGCACAGCTCTCGTCTGCCCCACCCTGTTCCAAAAGAATCCACTGTTCCAAAGGAGAACTCCAGAGCACAGGAACCCTACAACAACTGCTCTTCTCAGCAGTGGCACCAGCCTGGCACAGATGAACCTGTGGAGCTCAGCAAATCCAtgccCAAAAATCACCTTGTTGTGAAGATGGACTGAACAGTGCAGAAAGTGTGATGATTTTGCCTGGAACAATCACACAGTTTGTTTACTTTGCACCATAAACTGTTTCTGAACGAGGTTTTTACGCAGAGCATGAAGACGACTCAAAGGACTGAACCAAAGCACCTGTACAAAGCCTTAAACTGTGTAGTTCAGTAAAAGTGAGGAGGTTTGAGGGAAGCATTTCTGGATGTCATATCAGTCTTACAGAACAGTCTGCAGTCTGCTTGCAGAGCTAAATGCACTTTATTCACCTGCGTCACCAACATCTACCAAAATGAGGCTGTGGGGAATGGAAGCAGCGCTGTAGCGCTAAATACTAATGTAACTGAGCTTATTAGGGTTCGCCTAAtactttataattaataaaataaaacgcaCTCAGACCCAATGAGGGAAAATAGCCGTCACACTTTATTTTGCTcttcttctctccttttttttctctctgcccTACGGCTACCCCAGCAGGACATTCAGTGTACATACACATTCCATAACTCAATATTCCTTAAAGTCGGTTACACTAACAATGCCGCGTTCCCAAATGTGCTtcttcaaaaagaaagaaatcgtATAGAGGTCAAACTTTCCATAGTTTCCCCAAAGATCCCGTATTTTACTGTGAATGGATTTACAAAATCCattcacagtaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K08551 ESR2, NR3A2; estrogen receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39972 lncRNA downstream 276451 60892696 ~ 60893051 (-) True G29819
TU39956 lncRNA downstream 375711 60792776 ~ 60793791 (-) True G29803
TU39872 lncRNA downstream 644118 60520240 ~ 60525384 (-) True G29741
TU39878 lncRNA downstream 644118 60520240 ~ 60525384 (-) False G29741
TU39849 lncRNA downstream 668310 60498211 ~ 60501192 (-) True G29724
TU40110 lncRNA upstream 100113 61292975 ~ 61364878 (-) False LOC103029720
TU40111 lncRNA upstream 114241 61307103 ~ 61328118 (-) True G29930
TU40118 lncRNA upstream 174413 61367275 ~ 61383834 (-) True G29937
TU40213 lncRNA upstream 715841 61908703 ~ 61917427 (-) True G30001
TU40214 lncRNA upstream 715841 61908703 ~ 61917427 (-) False G30001
XM_007230931.3 mRNA downstream 433651 60731202 ~ 60735851 (-) False btbd6
XM_007230930.3 mRNA downstream 435467 60731202 ~ 60734035 (-) False btbd6
XM_007230927.3 mRNA downstream 435467 60731202 ~ 60734035 (-) True btbd6
XM_007230926.3 mRNA downstream 467249 60697286 ~ 60702253 (-) False xrcc3
XM_007230925.3 mRNA downstream 467253 60697286 ~ 60702249 (-) True xrcc3
XM_007230936.2 mRNA upstream 100014 61292876 ~ 61345032 (-) False LOC103029720
XM_007230935.2 mRNA upstream 100014 61292876 ~ 61345032 (-) True LOC103029720
XM_007230937.3 mRNA upstream 177133 61369995 ~ 61430279 (-) True nudt14
XM_007238744.3 mRNA upstream 514829 61707691 ~ 61815586 (-) False LOC103042845
XM_015602853.2 mRNA upstream 514829 61707691 ~ 61793630 (-) False LOC103042845
XR_002649735.1 other downstream 799888 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 1007478 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 1731204 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 2234713 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 2994798 58169321 ~ 58174704 (-) False LOC111189852
XR_002649101.1 other upstream 640586 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 2017419 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 2017419 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 2017419 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 2137182 63330044 ~ 63334846 (-) True G30376

Expression Profile