RNA id: TU152709



Basic Information


Item Value
RNA id TU152709
length 260
lncRNA type intronic
GC content 0.48
exon number 2
gene id G112986
representative True

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22332785 ~ 22333198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggccctgtttttctgcactagaaatgcgcaccctctccacttttagactctttggtctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcctgattttctgcgctagaaatgtgcactctctccgcttttagactctttggcccgattttctgcgctagaaatgcgcactctctccgcttttaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152708 lncRNA downstream 9210 22304528 ~ 22323575 (-) True G112985
TU152702 lncRNA downstream 126405 22205511 ~ 22206380 (-) True G112979
TU152703 lncRNA downstream 127541 22197799 ~ 22205244 (-) True G112980
TU152691 lncRNA downstream 198228 22116985 ~ 22134557 (-) True G112971
TU152689 lncRNA downstream 230608 22100118 ~ 22102177 (-) True G112969
TU152700 lncRNA upstream 9057 22342255 ~ 22345558 (-) True G112977
TU152716 lncRNA upstream 13432 22346630 ~ 22346890 (-) True G112988
TU152717 lncRNA upstream 13432 22346630 ~ 22384343 (-) False G112988
TU152719 lncRNA upstream 28020 22361218 ~ 22361959 (-) True G112990
TU152729 lncRNA upstream 57005 22390203 ~ 22451112 (-) True G112994
XM_007243010.3 mRNA downstream 105130 22217315 ~ 22227655 (-) True LOC103025049
XM_007241706.2 mRNA downstream 747306 21582146 ~ 21585479 (-) False LOC103040822
XM_022675109.1 mRNA downstream 762476 21568526 ~ 21570309 (-) True LOC103041116
XM_007241704.3 mRNA downstream 799711 21522609 ~ 21533074 (-) True LOC103040199
XM_022675104.1 mRNA downstream 825633 21503006 ~ 21507152 (-) True LOC111193678
XM_022675539.1 mRNA upstream 43114 22376312 ~ 22430384 (-) True LOC103026049
XM_022675540.1 mRNA upstream 45905 22379103 ~ 22430383 (-) False LOC103026049
XM_022675079.1 mRNA upstream 112691 22445889 ~ 22450399 (-) True LOC111193663
XM_022675542.1 mRNA upstream 121824 22455022 ~ 22471592 (-) False LOC103023872
XM_022675541.1 mRNA upstream 121824 22455022 ~ 22471591 (-) True LOC103023872
TU152441 other downstream 680051 21601244 ~ 21652734 (-) True G112778
TU152445 other downstream 747736 21581745 ~ 21585049 (-) True LOC103040822
TU152109 other downstream 2015448 20272000 ~ 20317337 (-) True G112507
trnae-uuc_17 other downstream 2236774 20095940 ~ 20096011 (-) True trnae-uuc_17
TU151769 other downstream 2599412 19732604 ~ 19733373 (-) True G112280
XR_002650693.1 other upstream 43114 22376312 ~ 22430384 (-) False LOC103026049
TU152733 other upstream 140504 22473702 ~ 22477307 (-) True LOC111193749
TU152750 other upstream 261246 22594444 ~ 22605124 (-) False LOC111193684
TU152923 other upstream 966030 23299228 ~ 23311986 (-) False LOC103039435
TU152964 other upstream 1219151 23552349 ~ 23553064 (-) True G113190

Expression Profile