RNA id: XM_022675079.1



Basic Information


Item Value
RNA id XM_022675079.1
length 990
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC111193663
representative True

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22445889 ~ 22450399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ATGGGAGCTGGTTGGACGCAGAGCTGGAAGGATGAGTGGAAAGTTGGGAAACTGTCTCTTTACCCCTCCAGACCGGAGGTTCTGCTTCAGCCACGATGGAATATTCCTCCATCCGTCTGGCTGATCTACCGGAGCTGCATGCTCGCCAACATAGTCAGCTGGTGTGTGTACACAGCCTTAGTCTTCAACACGCCCAAGTTCCTCATCTTCCTCAGCCACATATCATACATCCTCATGGGGCTGTACTACCTCCTGTCTCTCCTCAACCTGGCCTGGGCTTTTATTCACGTCAGAATCTTCTGTTACAGAAGGACCAGAGATCTCACCATGGGTGGCAGTGACGAGTCGGTGGGGACGTTCCCTCTCCCTGCTCTCCTGGCCTGGTCCCTCTGTTTGCAGTGGTTCCTCCACGCCGTGGTCGGCTCCTTCTCGCTCTGTGTGTCTTTCCTTTACTGGATCCTGAACTACCCCAGCTTTCAGCACTCTCTCACGGCCTTCACCATCAACCTGCACCTGGTCAACAGCGTCCAGACCGTCCTGGACGTCCTCCTGTCCTCCACACCTGTCCACCTGTACCACTACCTCTGTGCTCTGCTGGCAGCAGGCCTCTACATGGCGTTCGTGGTCGTCTACTGGCTGACTGGCTCCACCAACATCGGGGGACAACCCTATATCTACAGCCTGCTGGACTTCGGTGGGCGCCCCCTAGTGGCAGCGTTGGTGATTTTAGCAGTTTGCCTGCTGTGTCTGCCTTTCTTCCACTTTCTGCTCTGGAACCTGCAGCTCCTGAGAGAGAGGATGGCAGAGGGCAGTCGGGGGAGGAGACTGACCCTCAGGAAGTGGGTGTGGTGGTGGGTGAGGGTCGGGGGATGTCCTGTCTCTGAACTGGTGTTTTCTCTCGATCCAGGATCATCAGTGTTCGAGACCTCGTGTAAGGAAGCACTAGAGGAGATTCCCTAGTCTTTAAAAGTCTCATTCTAtcgtttttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152717 lncRNA downstream 61546 22346630 ~ 22384343 (-) False G112988
TU152719 lncRNA downstream 83930 22361218 ~ 22361959 (-) True G112990
TU152716 lncRNA downstream 98999 22346630 ~ 22346890 (-) True G112988
TU152700 lncRNA downstream 100331 22342255 ~ 22345558 (-) True G112977
TU152709 lncRNA downstream 112691 22332785 ~ 22333198 (-) True G112986
TU152743 lncRNA upstream 129074 22579473 ~ 22584023 (-) True G113008
TU152760 lncRNA upstream 212182 22662581 ~ 22666345 (-) True G113022
TU152774 lncRNA upstream 254000 22704399 ~ 22705663 (-) True G113030
TU152780 lncRNA upstream 310298 22760697 ~ 22762206 (-) True G113036
TU152781 lncRNA upstream 316642 22767041 ~ 22769078 (-) False G113037
XM_022675539.1 mRNA downstream 15505 22376312 ~ 22430384 (-) True LOC103026049
XM_022675540.1 mRNA downstream 15506 22379103 ~ 22430383 (-) False LOC103026049
XM_022675538.1 mRNA downstream 79191 22242530 ~ 22366698 (-) True LOC111193748
XM_007243010.3 mRNA downstream 218234 22217315 ~ 22227655 (-) True LOC103025049
XM_007241706.2 mRNA downstream 860410 21582146 ~ 21585479 (-) False LOC103040822
XM_022675542.1 mRNA upstream 4623 22455022 ~ 22471592 (-) False LOC103023872
XM_022675541.1 mRNA upstream 4623 22455022 ~ 22471591 (-) True LOC103023872
XM_022675543.1 mRNA upstream 4623 22455022 ~ 22471587 (-) False LOC103023872
XM_022675544.1 mRNA upstream 4623 22455022 ~ 22469476 (-) False LOC103023872
XM_022675545.1 mRNA upstream 23903 22474302 ~ 22477328 (-) False LOC111193749
XR_002650693.1 other downstream 15505 22376312 ~ 22430384 (-) False LOC103026049
TU152441 other downstream 793155 21601244 ~ 21652734 (-) True G112778
TU152445 other downstream 860840 21581745 ~ 21585049 (-) True LOC103040822
TU152109 other downstream 2128552 20272000 ~ 20317337 (-) True G112507
trnae-uuc_17 other downstream 2349878 20095940 ~ 20096011 (-) True trnae-uuc_17
TU152733 other upstream 23303 22473702 ~ 22477307 (-) True LOC111193749
TU152750 other upstream 144045 22594444 ~ 22605124 (-) False LOC111193684
TU152923 other upstream 848829 23299228 ~ 23311986 (-) False LOC103039435
TU152964 other upstream 1101950 23552349 ~ 23553064 (-) True G113190
TU153063 other upstream 1285555 23735954 ~ 23793461 (-) True G113276

Expression Profile