RNA id: TU154209


Basic Information

Item Value
RNA id TU154209
length 4567
RNA type TUCP
GC content 0.39
exon number 2
gene id G114134
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28125236 ~ 28129856 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaactacagtgtaaatagtcatgaaaataaagaaaacacattaaaaagagaaggtccaaacttttggcctgtactgtatgtaaaaattATCAATACAGTATGTACCAATAATCAAACTGCTGTCCAATATACGACTTACAGTATAAGATTCATGGTTGTCTATCCCTGCCAGTCCTAGAGTGaagatactgtatttatacacttgagagcaaaaaaaaaaaatcctcttaaataaaagcaaaaattgtgtatgtgtgtgtgtttctgtgtgtgcgtTTCTGTGCATTTGTGGGTGTGTCTATATGTGTGCAACAGCATTCAGTAATACATTCACAAGCACAATGTGTGTTCAAAACAGATTTTGCAGCGAGAGGACACTTTTACGTaacaaaaaaaacgaaacaaaacATCTGCGTTATCATCAACACCCAAGGCAAATTagcaaaatacagtatattctttggaaaaatcaaattattattttttttttttcaaaccaaGCAAGGCAGCTGTGATGACAAGATAtgcgataaaaaaaacacaagtcaTAAACCATGACGGATATTTCTAAGGTGTATAACACACCAAGACACCTTATCGACTTGTGTCTGCAAGCTCAAAATGcatttgagcttttttttttattacacatttttatgaCAATCCTGTTGCTCTTTCCGATCAGACCGCTGGGAAAGGTCTAGGAAAGATCAAGCATTCCAGATGCATCTGTAAATTAAGGCCTGCATATTGTTTCCTTTGCTGCATGTTCCTTTTAACACTTTCACTAACCTCAAATTGATTGATTTGCAAATCATATGACCTGTTTAGTATGTCTCAACTtatactattttaatatttaaaaaaaaagtgatacaAAGGGTTTTTTGAGCGATGCCTTGGCTATTGAGATGCGTGTGAGAATCTCAATGTCTAGGGTTCTTTATTCACCCACgcatttacacattatttacaAAAGTGGCTCATTCTTTGTTTTGTCACTCAAAAAAACCCTTTGTAGTTCTAAGTGTGCACTTAAAATGTACTTTCTAAGAAATGTCTGTATTATATATGTGGACAGAAGCATAGATGGAAGACAGAACAGTGCTCTTTAACTAAACTGTGCTCTTTGGAGATGCACTTTGTTGAAGGTGCAATTGAAAAAAGTTGAACACACATTTCttacagtaatgtgtaaaaaaacagagaccatcctttatgattttaattaccattcaaaacatacattaagttcaaattattcatttttgaGAAGATACTTCAAGAGATAATTAGGCTTTTAAAATTCTGCTCGATTGCAGACATTATTAAAAGATTTAGAGAAAACTGAATTTAATACAACAATGGACAATTGGTGTATCATCTCAAATAAAGAGTACTAAACATATTCTACATGAAGAGAGAATGGAGCTATGGGTCTGAATGGATGTGCAGCTCACCAAGAAGCTCTTACTGATAGAAGCAAGCagagaaaatattaataattgcaaaatgaataaataagctgctggtgtcCTCAGAACAATGGACTGGGCACCCTTAAGCctcagcattgctgagtagcatcacagcgaacTCGGAagaaaagtgcagcgactcgcttccgatacatcagctcacagatgcagccttgtgctgatctacatcacccaaGGAATGATGAgaagaaagagcaccatctacccacccgaagagagagcaaggtcaattatgctctctcagggctttggtagctgatggcaaactacatgaaAGGTTTCGAACTGACTTAGCCCACTGGACAACTTGGAGCCAGCACTGCATTGCTGTTTAAACAATGCAAATCAGAACGCATGAAATTAGACTGTTggcaaggtgtaagatagcaatgagcatcacaatgaaccttatgcagggtgtaagatagggccctatgTGTTTATAACATAGTTGTGTAGTTTTGGTTTCTTATTGCAGTTTATTGAGTGAGCTAAAGGACTTTGTTGTTCCCTGTCACCATCACATACATGAGCTGCATCTCCCTACTGTTGACATCGATTGATTTGTAGAATGGGGTGTGTCGGGCGATGGTGTGTTGTCTGTCCAGGTGTTGTGGTAAATTTTGCCATATCAccagttatttttcttcttctgatgCTAAATAGTTGGTCTGAAATTTCTAGAAGATCTAGAACTAGtgctagaaaagtgtttttacactACAGACaagtttttttgtataatagTATGTTCTAATGGTGGAAAATGAATATAAATCATTATTTCACGTAATGATTGTCTTAATGCCATTTTGACTGGAAAATAAAAGATGGTCTCCATTTTTCTACAGTGCTATACATGGCTTGCTTTGTACAGAACTTTTAAATCAAACTTCAAGTTTTCAGCTTGATCCCCAGTTGTACCATATTATTTTATCCACTAGCAGAATTAATAATGTATATCTTGAAGCTTATTGACATGTTGTTTGCGATGGGCAGTCGTGTCTTTAGTGTTACCCAGCAAAGTTTTAGTGGTTGCATAAAAAAGTTGAATCCCAACTGTgcatttttatccatttttaggAATGTGCAGTCTAAGCACATTCGAGTGGTAAAGGGGTTGCTGATCAGAGCAAGGCAAAGACAGGGTCCAATAAATGATCAGTGATCTCAGTCAGGATCTGACTATGCTTGGAAAAAGTTATGGTTGAATGTTCTCATAAAGTTTCCAGcaggttgttaaaaaaaaaaaaaaaatcactgaattaacTGTTATTTCACTgttaaataattgaaataatttgaATTAAATAGAATTAGATGTAATGTTTCATCACTGACTGATGTGATGTGACTGTAATGCATACGATTTAATGTATGAAAGGGGTTTAATCAAGTTTAATACTTTAAGTCatttaataatagtttatacACATTACATTAGTATATGGCTTTAGAGCttctctttattattaaaaaaaaaaaaaaaacgtaatattaagctttttttttgtaatcttcCTTGAAGCCATAGTAGTTTTTTAGTAAGAAATAAATTGCAAATATAAATATCCCTTTTAAATGTCCGATTCATGCGTATAATTATTAAAACCAGGGATTAGATAGAAATGCTGTAAACTTGAGACATTGTGATGGTGATGTACTTTTTTATacaggattaaagtgaaactctTATAATTGCTAGAGCGGTACGATGTGATTTTGTTCCTAAAGAGAATATACTAAGTGTGGCGTGTTTGGGAAtagaaattttaaaatattatgctgTCATGTTGTGAAGTACATTCATGGGCTAATGTGGACAGTGTGGAACTGTTGATGGAACTGTtcatcatctcatcatcatcatcagatcACCTGTTTATTGTGAGTGACGAACGTTAGCTAAAGGGGTGAACGGATGATGTGCTTTAAGTTTATAACAGTGTGTGCTTCGAGATAGAGACGTACCATGatattttatcagttttatctGCTCTTTTCATCTGTCTGGTCTTTCCTAATGCCTTttcccacttctttttttttttttatttaggagaGATAAAAGATGACCGGTGAACAGACACTTTGTCTTTTAAAAGAAGAAATTACTGGTGGCACCTTTCCAGGTGATCCAGGAAATGGCTAAGTACCAAAATGTTCCTTAGTCCACAAGATCCTGGTACTGACACTGAAGCTGTATCTGTAAAACGTAGCACTGGTTTTAAAGACGACAAATACAGCTTTTCGCCATGTTTCCCATTGTGTTTGGCTTCGGACGCTGCCACCACCAGTAGTGAATCCAGCTTAGAAAGCTTTCTTCAGCAGTTACTTGGTGCCAGTCCAGCCCCTGTCCCCATAAGCTCCTTCTCCAGTGGCGGAGTGAGGCGAAGGGGCACAGAGGTCAGAGTCTGTATCAGATTCGCCCTCCGCAATATAGGGTCTCACTTTAGAGCTTCGTGCCACACCGCTAAAGTAGGCGTTGTTGAGAAAGTCCAAATTCTCCTTCGACTGGGAGATGCTGAACCCGCTGAAGGAACGCTCCAGCTCCTCGTGATCCACTGAGGGGATGGATATGGAGGTGTCACTCTCAGCACCTGCCTGCTGTTGAGACAGTCCTCCCGCCTTCCCCTCCTCCAGCCCACTCCCACGAGCGTGGTGCTGTCCAGCACCTCGTGACCCACCGTTATGTCCGCCAGAGGAACGCTCGTGTGCGGGTGGAGGCGGGATACGCACCAAAGAAGGGTCACCCACAGGGGAGGTGCCCTGGCTGCGCTGAGGAGGTTCAGGGAGGGTGTGGGGATGCCAGGAGGTGGACGGGTGGCAGTGGGTCTGGTTGACGCAAGTAGAGGGAGGCGGGTCAAAGTTCTTCTGGCCCGCCGAGCTGTTGGAACGGATGATTTTAGTAATGGAGCCAGTCTTCTCCATGTGGTCGACAGGGCTGTGGTAGGGAGGGGCCGGATCAGGCTCCTTGGACGCAAAGTAGGCGTCGGTCTCAGACTGCGGGATTCCCATTCTCTGAATGTAGATGTTCACGAGAAAGTCCAGTTTCCTTTCCATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154171 lncRNA downstream 129216 27993938 ~ 27996020 (-) True G114102
TU154164 lncRNA downstream 173939 27951020 ~ 27951297 (-) True G114096
TU154155 lncRNA downstream 250080 27811273 ~ 27875156 (-) True G114087
TU154149 lncRNA downstream 290470 27768604 ~ 27834766 (-) True G114082
TU154154 lncRNA downstream 343109 27781733 ~ 27782127 (-) True G114086
TU154219 lncRNA upstream 463 28130319 ~ 28131466 (-) True G114143
TU154220 lncRNA upstream 463 28130319 ~ 28131466 (-) False G114143
TU154380 lncRNA upstream 33066 28162922 ~ 28164438 (-) True G114225
TU154383 lncRNA upstream 41823 28171679 ~ 28171970 (-) True G114228
TU154400 lncRNA upstream 87345 28217201 ~ 28217422 (-) True G114245
XM_015606721.2 mRNA downstream 233150 27674707 ~ 27892086 (-) False tox2
XM_007252680.3 mRNA downstream 233151 27674707 ~ 27892085 (-) False tox2
XM_015606720.2 mRNA downstream 233151 27674707 ~ 27892085 (-) False tox2
XM_015606719.2 mRNA downstream 233151 27674707 ~ 27892085 (-) True tox2
XM_015606722.2 mRNA downstream 233153 27674707 ~ 27892083 (-) False tox2
XM_022675630.1 mRNA upstream 168838 28298694 ~ 28323285 (-) True LOC103034708
XM_007253410.3 mRNA upstream 198867 28328723 ~ 28426989 (-) True kif5a
XM_022675633.1 mRNA upstream 324216 28454072 ~ 28473390 (-) False mbd6
XM_007253406.3 mRNA upstream 324216 28454072 ~ 28473390 (-) True mbd6
XM_022675634.1 mRNA upstream 362650 28492506 ~ 28515586 (-) True mars
XR_002650695.1 other downstream 805291 27317408 ~ 27319945 (-) True LOC111193752
TU153885 other downstream 1732039 26346140 ~ 26393197 (-) True G113888
TU153804 other downstream 2062952 26032895 ~ 26062284 (-) True G113826
trnar-ccg_1 other downstream 3123480 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 4223738 23901123 ~ 23901498 (-) True G113304
TU154457 other upstream 218409 28348265 ~ 28361481 (-) True G114270
TU154464 other upstream 218409 28348265 ~ 28361481 (-) False G114270
TU154468 other upstream 218409 28348265 ~ 28361481 (-) False G114270
TU154507 other upstream 453537 28583393 ~ 28584959 (-) True G114304
XR_001518740.2 other upstream 1148960 29278816 ~ 29284782 (-) False LOC103044966

Expression Profile