RNA id: XM_015606722.2


Basic Information

Item Value
RNA id XM_015606722.2
length 3429
RNA type mRNA
GC content 0.46
exon number 9
gene id tox2
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27674707 ~ 27892086 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgagtgagtgagcaacagagagagagagagagagagagagagagactcgcAGAGACGCTGAACCTGTGTTCATGCCTTCAGTGTAGCGGAGCGGGCGATGGATGTGAGATTTTATCCTGCACCCCCTTCCAGCGTGGGCTCCTGCACGCTGCCTGCCGAACCCAGCCTCGCCTCTCTGGACTATTACCACTGCAACAAGAACAGATACAGTGTAGGAGATCGTGCTAGGCTGTACAGCGGTTTCCCCGTGAGGCCCAACCCTGACGGGAAAAGACTGCCCTCTTCAGGGtttGATGGTGAAAACATGTACATGAATGAAAACAACCAAGAGTTCCTTTCCCCGAGTCAGGTAAGACCACAGAACTACTCTGGTCAGGGTGGGGGCAGTGGGAACGGAGGAGGTGGGGGTGACGAGGATTACGAGATTCCACCCATAACTCCGCCAAACCACCCCGAGCCGCCTCTTCTGCACCTGATGGATCCAGAGTCCAGCTACCTGTGTCACTCCCTGCCACACAATGGCCTGATCAACCCCTACTCTTACCCCGAGCTGCCCGCCCTCATGATGTCCAACATGCTGGCACAGGACGGACACCTGCTCTCCAGTCAAATGCCCTCGatcACGGGGGAGAAAAGACCCTCCACAGACATGATGAAGCCCAAGCCCAAAcctcagaagaagaagaagaagaaggaccCCAATGAGCCTCAGAAGCCGGTCTCAGCTTACGCTCTCTTCTTTCGGGACACTCAGGCGGCCATCAAGGGCCAGAACCCCAACGCCACCTTCGGGGACGTCTCCAAGATTGTGGCCTCCATGTGGGACAGTCTGGGAGAGGAGCAGAAACAGgggtataagagaaaaacagaagcgGCTAAAAAGGAGTACCTGAAGGCCCTGGCAGCGTACCGAGCGAGCCTGGTTTCCAAGACCTACAATGACCCAGTGGAGAGCAAAAATGCCCAGTCCAGCCAACCCTCGTCGCACATGATGCCCCCCAACCCACCGCTGTACAGTGTGCCTCCCCAGCCCTCCTCCCCCTACCTGGGCCCGAGCCCCTTCCCTCTGTCCGACCTGCAGAGCTACGCGGCCGGGGCGCCCCGCCACGGCCTGCCACGCTCGGCCATGCTGCCCGCCCTCAGCGCCTCCCCACCTGCCTCCTTTCAGATCAGCCCCCCTCTCCACCAGCAGCTTTCCCTGCACCAGGGCTCCCTCCTCAACCAGCCCATCCGCATGCAGCAGGTCCAGTCACAGCCAATCATCTCCCACCAGATGGGCCTCCAGGCCTCCCTCCACTCCCCGCCCCCAGGCCAACAGGGCTTCTCTCACTTACAGTCAGAGTATCAGAAGACTGTGGGGGGCTCTCAGTCTCCTGGGGCTCCGAACCCAGTGGGACAGAACCCTGAGTGGGACAGTGAGTACTGCAATCGGGAGTGTGGAAACCACTGCAGTGGCAGCATGATAGGCAGGGAGAagacactctacctcacttgaAGTGAATTGTGGAggaagaagacaaaaaaagtgATGAAACAACACCAGGGAGTACCCTACACCTCTCCACCCTTCCCCGACACCCTCTGTTTTTCCTCAGTGTCATTTTGCATTCGTTTTTAGAAGGATGTGTGCGCGTGTTCTGAAGACTACTAGTGATCCTCTCATTTTTTTGCCAAGCACTTAAAATGTATAGGCCTCCCACTGGAGACCTTCCAGAGCACTCATTCTTtctctgaataaataaattaaaaaaaaagacaaaaaagagatatattaaaggaaaaaaaacaaacagacaaactaCCGTAAAACTGGCCCTCAGGGCGAACGAGCTTTAACTAAAACAGAGGAAAAACTCTCCTCCTCTcggttacttttttttttcatgctctcgttttatgttggtttatttatttcttgctTGCTACATCGCTTTTTTTTGCCAATAACAGGTCCTGTACTGTAGAGAAATACTCTTCTGATGAAGTCATCAAAGGCCCACAGCTTACTGTAGGTCCACCTGATGCTCTGTGAATTTCGAGAAGATATTAGTAaggacagaaaagaaaaaaaaaatagaaacaagtGAATAGATAAATGAATTTAACAACttctttttgtaatttttaaagacCTCCATAGGTCTTTAATGATCTGTCACAGTGTGATTGTAAATATCACTTTTTTTGGGATCAAATTGGGAAAATGAAGTccagatatttttttcttctttaatatgacttataattcattaatttgtattttaaatggtATCTTGTGAGCGTGTGCTGATAGGTGACTGAGCGAACGCGTGCGAGTGTGCttgtctgtatgtatgtgtgtgtgtgtgagagaatgtgtgagtgtgtgaacgagtgtgtgtgtgtgtgtgagagtgtgcatTGTAAACATTGATCAGCCTGTGCAGGTGATATCAGAGGAGTGTTTCACATAAACACAATCTTGCATTAAATCTGTGGTCACTGGTGGGATATTTAAAGATAGACGGTTGGCCGAAACCATCACTGACCGCGTGACCTGGCTCCGCCACTCGGGTTCCACGCGCTCCGGCTCCGCCCGCGTCGCTCACGTGGAAACCTTTACTGCCCGAGTCTGATTCTGTCGAGCTTTGTTTTAGGGAATAAAATCTGGAGCGATTTGATTGGCTGTTGTGTCTCAGGTTGTACATTTCAGACGGGAGAACATTTGTATTGGGGAACAGGTTTAAAGAGATTTAGACCCCCAGAATAAAGACAAGCGCAGGTCTGGATGAAAAGGCAAAGCTTTTGTCTAGTCTGACTGATGAATCCACACCAGGTGAACTAAACCATGCTCAATGTGAGATATTACagcacacatttaaaaacaacagtggGTCTATAGTTTTCTAGTAGCTTTGCTAGGTGTTATATTGTGTTGATCTCATCCTTAAGTtttgtgaggaaaaaaaattacatttgatcatttagtcaaactttttctttctttctttcactgtagcataatattttagtttgggaaaaaaaagaataacttttaagacatttaattTGTGTACAAACCTGCCAATTgtagttattttatttgtaaagccagtaatgataattattttaaattgttacCAACTTATCTTTTTTGCAAGTTGCCCATCagttatttaattgtttaacaGGTTTCCTATCTATTTATGAACAAAATGAGATCATTTTTTGCTTATAACTACATTATTTGAATTTtctcgtttgtttgtttgtttttttgtttttgctctttttttttttggtttgatgatgatgattgctttttttggtttttttttgttttttactttttgatgcTGGCCTTTTCTTTCCTTGCCAGCCAGGTCATTTTGTGTCACTATGcctttttgtttcatttgtccgtaataaaaaaatgttaaaggtgAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154140 lncRNA downstream 29286 27642433 ~ 27645421 (-) True G114074
TU154137 lncRNA downstream 29286 27643506 ~ 27645421 (-) False G114074
TU154138 lncRNA downstream 29286 27643506 ~ 27645421 (-) False G114074
TU154136 lncRNA downstream 31327 27642433 ~ 27643380 (-) False G114074
XR_002650697.1 lncRNA downstream 50972 27622792 ~ 27623735 (-) True LOC111193754
TU154164 lncRNA upstream 58937 27951020 ~ 27951297 (-) True G114096
TU154171 lncRNA upstream 101855 27993938 ~ 27996020 (-) True G114102
TU154219 lncRNA upstream 238236 28130319 ~ 28131466 (-) True G114143
TU154220 lncRNA upstream 238236 28130319 ~ 28131466 (-) False G114143
TU154380 lncRNA upstream 270839 28162922 ~ 28164438 (-) True G114225
XM_022675619.1 mRNA downstream 111685 27513399 ~ 27563022 (-) True LOC103038159
XM_007252679.3 mRNA downstream 289558 27358188 ~ 27385149 (-) True LOC103032591
XM_007252677.2 mRNA downstream 322256 27347467 ~ 27352451 (-) True snrpb
XM_022675618.1 mRNA downstream 330244 27323869 ~ 27344463 (-) True ddx27
XM_022675091.1 mRNA downstream 357471 27293559 ~ 27317236 (-) True znfx1
XM_022675630.1 mRNA upstream 406611 28298694 ~ 28323285 (-) True LOC103034708
XM_007253410.3 mRNA upstream 436640 28328723 ~ 28426989 (-) True kif5a
XM_022675633.1 mRNA upstream 561989 28454072 ~ 28473390 (-) False mbd6
XM_007253406.3 mRNA upstream 561989 28454072 ~ 28473390 (-) True mbd6
XM_022675634.1 mRNA upstream 600423 28492506 ~ 28515586 (-) True mars
XR_002650695.1 other downstream 354762 27317408 ~ 27319945 (-) True LOC111193752
TU153885 other downstream 1281510 26346140 ~ 26393197 (-) True G113888
TU153804 other downstream 1612423 26032895 ~ 26062284 (-) True G113826
trnar-ccg_1 other downstream 2672951 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 3773209 23901123 ~ 23901498 (-) True G113304
TU154209 other upstream 233153 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 456182 28348265 ~ 28361481 (-) True G114270
TU154464 other upstream 456182 28348265 ~ 28361481 (-) False G114270
TU154468 other upstream 456182 28348265 ~ 28361481 (-) False G114270
TU154507 other upstream 691310 28583393 ~ 28584959 (-) True G114304

Expression Profile