LOC111193754


Basic Information

Item Value
gene id LOC111193754
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27622792 ~ 27623735 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650697.1
ctgcgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccCGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaacgaataaaaaaaataaataaagctactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650697.1 True 363 lncRNA 0.48 2 27622792 27623735

Neighbor

gene id symbol gene type direction distance location
LOC103038159 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 59770 27513399 ~ 27563022 (-)
LOC103032591 itcha,LOC108431834,LOC108271999,LOC107681287,LOC107666068 coding downstream 237643 27358188 ~ 27385149 (-)
snrpb snrpb,LOC108272150 coding downstream 270341 27347467 ~ 27352451 (-)
ddx27 ddx27,LOC107587605,LOC107681294,LOC107553908 coding downstream 278329 27323869 ~ 27344463 (-)
LOC111193752 NA coding downstream 302847 27317408 ~ 27319945 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding upstream 50972 27674707 ~ 27892086 (-)
LOC103034708 LOC108272126,LOC108431801 coding upstream 674959 28298694 ~ 28323285 (-)
kif5a kif5a coding upstream 704988 28328723 ~ 28426989 (-)
mbd6 LOC108431819,LOC107558151 coding upstream 830337 28454072 ~ 28473390 (-)
mars mars coding upstream 868771 28492506 ~ 28515586 (-)
LOC111193753 NA non-coding downstream 155474 27465944 ~ 27467318 (-)
G113964 NA non-coding downstream 349669 27272850 ~ 27273123 (-)
G113956 NA non-coding downstream 424601 27197903 ~ 27198191 (-)
LOC111193691 NA non-coding downstream 433193 27160762 ~ 27189599 (-)
G113949 NA non-coding downstream 496423 27126165 ~ 27126369 (-)
G114074 NA non-coding upstream 18698 27642433 ~ 27645421 (-)
G114081 NA non-coding upstream 116336 27740071 ~ 27742552 (-)
G114082 NA non-coding upstream 144869 27768604 ~ 27834766 (-)
G114083 NA non-coding upstream 147149 27770884 ~ 27771302 (-)
G114086 NA non-coding upstream 157998 27781733 ~ 27782127 (-)
G113888 NA other downstream 1229595 26346140 ~ 26393197 (-)
G113826 NA other downstream 1560508 26032895 ~ 26062284 (-)
ctsa NA other downstream 1936215 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 3605991 24004549 ~ 24016801 (-)
G113304 NA other downstream 3721294 23901123 ~ 23901498 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 501501 28125236 ~ 28129856 (-)
G114270 NA other upstream 724530 28348265 ~ 28361481 (-)
G114304 NA other upstream 959658 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 1523701 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 1655081 29278816 ~ 29284782 (-)

Expression


Co-expression Network