LOC103032591 (itcha,LOC108431834,LOC108271999,LOC107681287,LOC107666068)


Basic Information

Item Value
gene id LOC103032591
gene name itcha,LOC108431834,LOC108271999,LOC107681287,LOC107666068
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27358188 ~ 27385149 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252679.3
CACATGACCGGGTGATGGAGGCCGCAGTGGAGGACCTTTGATCAATGGAGTAGCGTAGCTAGACATGGCAAAATACATCAGCCGGACGGAAACGCGGGGTTTTCCCTGTATTACAGTCTTTAAGAGCCGATTTTGAGATTCTGAGACGTTGATCTGCATCTGATCTGAGCAACCGAGCCCCAGCAGGCGCTTTTAATGGCTGCACAATGAAGGCCCAATTACAGATAATAGTTCTCTCAGCTAAGCTGAAGGAGAACAAGAAGAACTGGTTCGGGCCTAGTCCGTACGTGGAAGTGGCCGTGGATGGCCAGTCTAAGAAAACGGAGAAATGCACCAACACTCACAGCCCCAAATGGAAGCAGCCTCTCACTGTGATTGTTACCCCCTTCAGCAAATTAATATTTCGTGTCTGGAGTCATCAGACTCTCAAATCAGACATTTTGTTGGGAATGGCGACTTTAGAAGTCAGTGAGACCCTCAAGTCGAATGACATGAAGATCTGTGAGGTGGTGCGGACCCTGCTGCTGAGCACTGAGAGAGACGGTAGTGACGTGGTGGGGGATTTGTCGGTGTGTTTAGATGGAATGCAGGTGGATCCTGAAACCTTCGCCTCAGAAGAACAGAAGCACAATGCTCTTCCTAATGGGGAGTCCAGGCTGAATGGGGATTCGGCTGGAAGatCAAGTCGAGACTCTTCGCCATCCAGTGACATTGCTGACGATACTTCGCTTCCCAATGGCCACGCTATGGGCAGTACAGGGTCACCCTCTCCTTCAGCAGGTTCTCTGAGACCACCACGCCCTCCTAGACCACAACGCCCTCCCCCGCCATCACCTCAGAGACCACCCTCTTCCACAGCCTCTTCTACAGGCTCTACTCCAACCCATGGCAGTGCCGGTCCTAGTCCAGAGGTTTCACcacgtgtgtgtgttaatggtgAACCAGCAAGCCAGGGCTCAAActctggttctggttcaggcCAGGCCCTCCGGGTCAGCCCGACACCACCCAGAGTTTCCCCCATCAACAACGGCCCTCTTCCTCCAGGCTGGGAGCAGAGAGTGGATCAGAATGGACGTCTCTACTTTGTGGATCACATTGAGAAGAGGACCACATGGGAGAGACCAGAACCGTTGCCTCCTGGTTGGGAGCGTCGTTTGGATCCAATGGGCCGGGTGTACTATGTGGATCACATTAGCCGGACCACCACGTGGCAGAGGCCCACAGCAGAGTCAGTGAGGAACTATGAGGAGTGGCAGAACCAGCGTAGTCAACTGCAGGGAGCCATGCACCAGTTTAACCAGAGATTCATCTATGGGctTCAGGACCAGCTAGCACCTGCAGCTAATAAAGAATTTGATCCGCTGGGTCCTTTACCACAAGGATGGGAGAAACGAACTGACAGTAATGGAAGAATGTACTTTGTTCATCATCCTACAAGGACAACACAGTGGGAAGATCCTCGCACTCAAGGGTTGTTGAATGAGAAGCCCTTGCCTGAAGGTTGGGAGATGAGATTTACCGTAGATGGGATTCCATATTTTGTTGACCACAACAGGAGAAGGACGACCTACATCGACCCTCGCACAGGCAAATCCTCACTAGAAAACGGCCCACAGATCACTTATGTGCGAGACTTCAAAGCCAAAGTGCACTACTTCCGCTTCTGGTGTCAGCAACTGTCAATGCCTCAGCACATCAAGATCCACGTCAATCGCAAGACACTTTTTGAGGACTCTTTTCAGCAGATAATGAGCTTCCACCCACAAGATCTGAGGCGAAGACTGTGGATAATCTTCCCAGGAGAGGAGGGGCTAGATTATGGAGGAGTGGCAAGggaaTGGTTTTTCCTGTTATCCCATGAGGTTCTGAACCCCATGTACTGTCTATTTGAGTATGCGGGCAAAGACAACTACTGCCTGCAGATTAACCCCGCCTCCTCAATCAACCCGGACCATCTCAAGTACTTCAAGTTCATTGGACGATTCATTGCAATGGCTCTGTTTCATGGGAAGTTCATAGACACAGGCTTCTCTCTGCCCTTCTATAAGCGGATCCTCAACAAGCCTCTGGCTCTGAAAGACCTCGAGTCCATCGACCCGGAGTTCTACAACTCTCTCATCTGGATCAAGGAGAATAACCTGCAGGAGTGTGAGCTGGAGATGTATTTCTCAGTGGATAAAGAGATCTTGGGCGAGGTCACCACTCATGAACTGAAGCCAGATGGAGGAAATATTCTTGTAACAGAAGAAAACAAAGAGGAATATATCAGGCTGGTGGCAGAGTGGAGATTATCCAGAGGAGTTGAGGAGCAGACTCAAGCCTTCTTTGAAGGTTTTAATGAAGTCTTGCCCCAGCAGTACCTGCAGTACTTTGATGCCAAAGAGCTGGAGGTGATGTTGTGTGGCATGCAAGAGATAGATCTTTCAGACTGGCAGAGGAACACCATCTACAGACATTATGCTCGTAGCAGCAAGCAGATCATTTGGTTCTGGCAGTTTGTGAAAGAGATGGATAATGAGAAGAGAATGCGTCTGCTGCAGTTTGTGACTGGAACCTGCAGACTTCCTGTTGGAGGGTTTGCTGATCTAATGGGGAGCAATGGACCACAGAAGTTCTGCATTGAAAAAGTGGGAAAAGAAAATTGGCTTCCCAGGAGCCACACATGCTTTAACCGTTTGGATCTTCCCCCCTATAAGAGCTACGAGCAGCTCAAAGAAAAGCTGACGCTGGCCATCGAGGAGACTGAGGGTTTCGGCCAAGAGTGATtccctcacacaaacacatctgCACTCGCACAGGACCTCATCAGCACCTCTCCATACCCCTGAGAAAACACTGCTGATTCTCAagtgaaggaaagaaagaaagaaatcaagaggaaaataaacTCATGGAACTATGGTTTCCATATCCCTTCGCCTAGGCTTACATTTCCCCTCTTCTTCAAGGTTTCACTTGTTCTTGCGGTAATGTTGCCTTAGTTAGTAAGTAATCTATGCACCAGAATGCCCTGGCTTGATGAACTGAATCCTGCTTtaagacatgcacacacagtcCAGGCTATGCACCCTACTCCCTGGTTCGCTGGATTCACTTTTAGGACTTTTTTTCCGAGACTGTTCGGTCATTTCTGATTTTAACCTTGTACATGCCTCCAGTACAGTCGGACATTTTATCGTTCTAGCAGAACTTGAAGTAGTTTCCCCTCTGTGAGATGGTGCCGTGTCTGTGTCTGATAGAGCTCTTCTGTATGCATGACATAAAAATACACCATAGTT

Function

symbol description
itcha Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in posterior lateral line primordium. Orthologous to human ITCH (itchy E3 ubiquitin protein ligase).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Itchy-like

GO: NA

KEGG:

id description
K05633 WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252679.3 True 3281 mRNA 0.49 24 27358188 27385149

Neighbor

gene id symbol gene type direction distance location
snrpb snrpb,LOC108272150 coding downstream 5737 27347467 ~ 27352451 (-)
ddx27 ddx27,LOC107587605,LOC107681294,LOC107553908 coding downstream 13725 27323869 ~ 27344463 (-)
LOC111193752 NA coding downstream 38243 27317408 ~ 27319945 (-)
znfx1 NA coding downstream 40952 27293559 ~ 27317236 (-)
cdh22 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding downstream 288956 26723797 ~ 27069232 (-)
LOC103038159 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding upstream 128250 27513399 ~ 27563022 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding upstream 289558 27674707 ~ 27892086 (-)
LOC103034708 LOC108272126,LOC108431801 coding upstream 913545 28298694 ~ 28323285 (-)
kif5a kif5a coding upstream 943574 28328723 ~ 28426989 (-)
mbd6 LOC108431819,LOC107558151 coding upstream 1068923 28454072 ~ 28473390 (-)
G113964 NA non-coding downstream 85065 27272850 ~ 27273123 (-)
G113956 NA non-coding downstream 159997 27197903 ~ 27198191 (-)
LOC111193691 NA non-coding downstream 168589 27160762 ~ 27189599 (-)
G113949 NA non-coding downstream 231819 27126165 ~ 27126369 (-)
G113944 NA non-coding downstream 478641 26817172 ~ 26879547 (-)
LOC111193753 NA non-coding upstream 80795 27465944 ~ 27467318 (-)
LOC111193754 NA non-coding upstream 237643 27622792 ~ 27623735 (-)
G114074 NA non-coding upstream 257284 27642433 ~ 27645421 (-)
G114081 NA non-coding upstream 354922 27740071 ~ 27742552 (-)
G114082 NA non-coding upstream 383455 27768604 ~ 27834766 (-)
G113888 NA other downstream 964991 26346140 ~ 26393197 (-)
G113826 NA other downstream 1295904 26032895 ~ 26062284 (-)
ctsa NA other downstream 1671611 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 3341387 24004549 ~ 24016801 (-)
G113304 NA other downstream 3456690 23901123 ~ 23901498 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 740087 28125236 ~ 28129856 (-)
G114270 NA other upstream 963116 28348265 ~ 28361481 (-)
G114304 NA other upstream 1198244 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 1762287 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 1893667 29278816 ~ 29284782 (-)

Expression


Co-expression Network