G114081


Basic Information

Item Value
gene id G114081
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27740071 ~ 27742552 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154148
TTGAAGCTCTGGAGCTGAGCCAGGCTGTCCGTACTGTACAAATACAGTGTACATTACAATGATAATGAGCAGTAATACAGTCTGATACTGTTCACTGTGAATTACTGTGCTTTAGGAGGAATAATAACGTTATAACAGATGAGACTTTATTAGTAGAATATAATGGTAACATATTTAATGTTGAGGAAATGCTGCTGATTTGAATCTAAAAATGTCACTCTTTCTCGTTTACTCCAGATTATTGTGGTAGTTTCACTGCCtcgtgtgttttttgtgtgttttttgtgtgttttcacgtttaacacaaaacacagacacaccacacctcaacaaatcacaaaaaaaacagcattgctCTTTCATTTCAATAGACACTGTGGTTCTGAACCCAAACCAAAACACCCGAGCACCAAAGCAATGAGTACGAGCATTTTCATTTACAGGTAGAGCTCTAGAAGACCTGCTAACGTAGAGCGACTGGCTTTGGTGTGTGTCGTTTCTGGCGCGTCGCCTGACGTCGTTGGGTCATGTCGTTTCCCAGGCTTTGTTTGCGCCGCTTTGGCTTCCACGTAAACAGAATCTGCGGTGATGAAATGTATCGGACGCATCGAGAGGTCAGTGCATATATTCCATCACCagaaaagaggagaggagggaggggaaaaaaagccaTTAGGGTTCATCTTCCTCCCCCAGCTCTCTCCCTgctaaagagagatagagagatctGTTTTCATTAGAGTGGTTTAGAATGAGGTGGaaggaagcagagagagagagagagggagaagagagagagactgtcagtgaaaagaaatgagaaaaggagagagagagagatatggaggAAATAGtgggaaagaaagagggagtgaAAAATGGTTGAGTGAATGAAAAGGCAGAAAGGAGCACAGGTTTGAATGGAATGTCATCAGTACTAAGAGGTCTGCAGGAGTTTTTTGGCTCATGGATGCAGCTCCCATTCCATTAGGCATCATGAAGACTGCACTTCTTAAGCAAGAACATTTGCTTGGCTGGATCATATTTCTCCTATGGTTTTATGGTAAAGCTGATTTCAATATATTATTGTTCGATCAGTTCTGACACACGGACGCCTTTTCACaaactcagcagcagcagtgctgacAGAGAGTAATAAGAAGTTTATTACCTAATGCTTAAGCTACTCTTCAAAGCATCAAGACCTTTACGTTGGCCCATGCTTCAATTACTCACCCTCTGAGTTATTAAGtaaatcatagtagatactgaataaagcTTAATAagttagaaagaaaagaaaatccatggtaacactttacttggatggtccatttgatggcctctttgatgctcaactgacattcaactaccattcaactacatgtctattaaatgcaaatgaactgaaaggtgaaagtaaatgattctctattgaatataacccaacattcaactctaaacgctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154148 True 1469 lncRNA 0.41 2 27740071 27742552

Neighbor

gene id symbol gene type direction distance location
LOC103038159 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 177049 27513399 ~ 27563022 (-)
LOC103032591 itcha,LOC108431834,LOC108271999,LOC107681287,LOC107666068 coding downstream 354922 27358188 ~ 27385149 (-)
snrpb snrpb,LOC108272150 coding downstream 387620 27347467 ~ 27352451 (-)
ddx27 ddx27,LOC107587605,LOC107681294,LOC107553908 coding downstream 395608 27323869 ~ 27344463 (-)
LOC111193752 NA coding downstream 420126 27317408 ~ 27319945 (-)
LOC103034708 LOC108272126,LOC108431801 coding upstream 556142 28298694 ~ 28323285 (-)
kif5a kif5a coding upstream 586171 28328723 ~ 28426989 (-)
mbd6 LOC108431819,LOC107558151 coding upstream 711520 28454072 ~ 28473390 (-)
mars mars coding upstream 749954 28492506 ~ 28515586 (-)
LOC103034067 NA coding upstream 854390 28596942 ~ 28646410 (-)
G114074 NA non-coding downstream 94650 27642433 ~ 27645421 (-)
LOC111193754 NA non-coding downstream 116336 27622792 ~ 27623735 (-)
LOC111193753 NA non-coding downstream 272753 27465944 ~ 27467318 (-)
G113964 NA non-coding downstream 466948 27272850 ~ 27273123 (-)
G113956 NA non-coding downstream 541880 27197903 ~ 27198191 (-)
G114082 NA non-coding upstream 26052 27768604 ~ 27834766 (-)
G114083 NA non-coding upstream 28332 27770884 ~ 27771302 (-)
G114086 NA non-coding upstream 39181 27781733 ~ 27782127 (-)
G114087 NA non-coding upstream 68721 27811273 ~ 27875156 (-)
G114096 NA non-coding upstream 208468 27951020 ~ 27951297 (-)
G113888 NA other downstream 1346874 26346140 ~ 26393197 (-)
G113826 NA other downstream 1677787 26032895 ~ 26062284 (-)
ctsa NA other downstream 2053494 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 3723270 24004549 ~ 24016801 (-)
G113304 NA other downstream 3838573 23901123 ~ 23901498 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 382684 28125236 ~ 28129856 (-)
G114270 NA other upstream 605713 28348265 ~ 28361481 (-)
G114304 NA other upstream 840841 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 1404884 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 1536264 29278816 ~ 29284782 (-)

Expression


Co-expression Network