cdh22 (cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302)


Basic Information

Item Value
gene id cdh22
gene name cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26723797 ~ 27069232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675617.1
GGCGTGGCgcgcgatagagagagagaggggatgcGCGCGCCACCGTTTGTTTCTCGCCGCAGCGCACGAGCGGAGCTTCATCTGAGGAGCAACTGCGAACCGGGAGGATCTCAAACTCATACCAGGGAGAAAAAACAGCACCGGTACAACCAgtacaacagcaccagcatctccagcatcagcaccagcagcagcttcagcggCACTGCGCCGGGCTTCAGATCCAGGGGACTTACAGGGATGAACACAAAGTGAAGAAATAGGACCATAAAGAATTCAGTACCTGCAAAGCAGATGTAGAGGTGAGCTGCTCATTTTCCGGCATGTTCTCCAGAAGATTGTGGAAGGTCAAGTGTGGATGCAGCTGATGCCTTGTCGAGGAAGCTATACCAAAGCACTAAACCCCCCGACTGCTGAGGATGTGGCTCATTACACGTTGCTGGGAAAAAGCAAGGAAATAGCGTCCGAGAGTTTGGAAAGTATTTTTTGCTCGAGTGAAgagttttaattacttttttgcGGTACCTTTTGGAAGAGTTTAAATGTGCGAATGTTCAGTGATAACATGGAAGagcacaaatgaaaaaaaaaacttattttggacatgcttcattttacaaataaatatagtaCAATAATTAAACCAGCAATAACGAATTTGCTGTCTCCACCACTGTCCTTCACCATAGCCTGATTGGGTTTGCTGAATGGGATTCAACCTAAAAGGCGACTAAAGCTCTGAATACTGCTTCTGTTTCTGCTTGGCTCTCTCGATTTCCAAGCATGTATTCACCTCATATCACCTGGCCCAAGTCCACAGAGTTCCACAGAGGCTCTGTTGTAGACACACAAGCCTGTGGTCTTGTGAGCAGTAGACCAGAGTGAACCCAACAGCCTGGGTCTTCAGCACAACCCCTGCAACAACTTCCAGAAACTTCCTTTTGGCTGAATTCCCCAGAATAACAGAATACTGCATTGTGCATTCACTACGATCCAGACCAGACCCTCAATAACTCACTGAGGAAACTCATAAATCTGCTGAGGAAAGGCAGCAATCTTCACATTTTGCGAAATGTTGAAAGATTAATTGGATTTCAAGCCTcttcaaacagaaaaaaaaaaaaaaaaaacgccttatTATTTGGAAGTTTATCTTGACTTGCGTTATGAACCTTCTCCACATGTAGAAGGCAGAGTTATCCCAATATGGTTGCCCACTGGAGAGGAAGGGCGTCGGCTCTGATGGTGACTCTGGGGGTCCTGCACTGCTGGTGTTGGGGGTCCTGTCATGTTGAAAGGACTAGTgagaaaagcactgtgtctcACGAACGAGTGAAGAGGGGCTGGGTGTGGAACCAGTTCTTTGTGGTGGAAGAGTACACAGGGACGGAGCCGCTCTACGTCGGAAAGATCCATTCAGACTCGGATGAAGGGGACGGCTCCATCAAGTACACCATATCCGGAGAGGGAGCAGGGACTATATTCATCATCGATGAGGTGACAGGAGACATCCACGCCACGGAGCGTCTGGACCGGGAGGAGAAAGCTTTCTACACGTTACGAGCTCAGGCTCGAGACCGGCAGACCGACGCCCCTCTCGAACCGGAGTCCGAGTTCGTCATAAAGGTCCAGGACATCAACGACAGCGAGCCCAAGTTCCTGGAAGGACCGTACATCGGGAGTGTGGCTGAGCTGTCTCCAATCGGAACTTCGGTAATGAAAGTGATGGCATCGGACGCGGACGACCCGACCTACGGCAGCAGTGCCAGGATAGTGTACAGCGTTCTGGATGGAGAGAAGTTCTTCTCggttgacagacagacagGAGTGATTCGAACGGCGGTGGCTGATCTCGATCGGGAGACGCAGGACCGCTACGAGCTGGTCGTCAAGGCAACAGACATGGCAGGCCAAATGGGCGGTCTCTCTGGCTCCACCACGGTGACCATAGTGATCACGGACGTTAATGACAACCCTCCACGCTTCCCTCAGAAGATGTACCAGTTTTCCGTTTCGGAAGGGGCGTCCGTCGGAACGTCGGTCGGCCGGGTGGTTGCGACGGACGCGGACATGGGCGAGAACACGGACATGAGCTACCTGATCAAAGACGAGGAAGGAGGAGAGCTGTTCAAAGTCTCCACTGATGGAGACACCCAGGAGGCCGTCATCACCATCAAGAAGCCTCTTGACTTTGAGAAGAAGCGAACCCATAACGTGGTGGTGGAGGCAGTTAATAAACATGTGGACCCCCGTTTTGTGGACTTGGGCTCGTTCCGGGATCAAACCATCGTCAGGGTCAGTGTTTCGGACACAGATGAGCCCCCGATATTCTTCCCTCCCACTGGAACTATTATGGAAGTGCAGGAAGACGCCAAGCAGGGGGCTCTTGTGGGGATTGTCACTGCCAAGGACCCAGATATGGATAACGTACCTGTGAGATACTCGATAGACCGGAGCACAGACCAGGAACAGATTTTCAACATTGATGCTGTGACTGGTGCCATCACCCTGGGGAAGATATTGGACAGGGAAACGGCAGGTTGGCACAACATCACAGTGACAGCCGTAGAAGCAGATAACCAGTCCATGGCTTCCCAGACAGCAGTTAGCATCCGAATTCTGGATGTGAATGACAACCCGCCTGAGCTGGCCACCCCTTATGAAACTAAAATCTGTGAGGATGCTAAACCTGGCCAGCTTATTCACACCATCAGTGTGGTGGACCGGGATGAACCTCAGTCTGGCCACCGCTTCTATTTCACACTGGCGCCCGAAGCCTCCAACAACCGCCATTTCGCACTGTGGGACGTCAAAGACAACACGGTGGGCATTAGGACCCAGCGATCGGGTTTTAACCGGCAGGAGCAGAACGTCTACCTGTTGCCGATCCGGGTGGTGGACAGCGGACCCCCAGCACTGAGCAGCACCGGGACCTTCACTATCCGCGTGTGCGGCTGCGACACTGTAGGAAACATCCAGTCATGCAACGCGACGGCGTTCGTCATGTCCGCGGCGCTCAGCCCCGGAGCCCTCATCGCCCTGCTGGTCTGCATGCTCATCCTCATAGtCCTGGTGCTTCTGATCCTGACCCTGAAGCGGCACAGGAAGGGTCAGCGCATGTCTGAGGATGAGGAGGACATGCGCGACAACGTCATCAAGTACAACGACGAAGGCGGGGGCGAGCAGGACACCCAGGCCTATGACATGAGCGCCTTGCGGAGCCTCTACGACTTCCCCGAGGTGAAGAGCTCCGAGTCGGGCACCGACCTGCGCTCTCTGCCCCAGTGGATCCAGAACCGGGTGACGGGGGACGGAGGGGCCGCCGACTTCTCCCTGTTCAAAGGCTACATCCGTAAGAAGGTGGAGCAGGCGGACGCCGACCTGTCGGTGCCGCCGTATGACTCGTTCCAGACGTACGCCTTCGAGGGCAGCAGCTCGCCGGCGCTGTCCCTCAGCTCCATCCGTACACTGTCCAACACCTCAGAGCAGGACTTCTCCTACCTCAGTGACTGGGGGCCGCGCTTCAGGCAGCTGGCAGGCTACTATGCGCCTGGACAGCCGGAGGAGGAGGGGTCCTAGCACTGCCCTTCCTTTCTTCCATTATTCCTTTCTTTCAAATTGTCACAGAAGACAATGTTCTTGTTCCACAGCCCCTATTGTCCAGTCCTGGAAGTGCCACCACCAACCACTGTCCTCTACCAGTGCTCTCCTGAGATAAATCTTGGAATTCTTGGATCCCAGTCAGTGGCGAGGGTCTTAATACAGCACCCCAGACCCTGAAAAAAAGCCACAAATGGTTTGCTTCGGTtgcttttgggaaaaaaaaaaagaaatataaataaaagctcaTGACAAGAAGTGGCAGAGTAGCAAGACATGCTAGGAGTCGGGCAAAGCTCCAATAAGCTGGCACCTGTCAGAGCGCTACAGGACAGCCATGCCGTGCCATATGCACAACACTGAACTGTCATTGTTTCCtttctaagtgtttttttttttttatttcttgtgtgtgcgtgtgtactTTCCTCGCTCTGTTGGCGGAGACAAACATGGACTAGTGACTCAGTagtgagattaaaaaaaacacacagaaccgCAGAACCAGGAGGAAAGTCTTCTCTACCAAGCCAAGGCAACCCAACCCAGTTTCCCCAGAGGAGAACATGTATTTATTAaggagaat

Function

symbol description
cdh22 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: cadherin-22

GO: NA

KEGG:

id description
K06812 CDH22; cadherin 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675617.1 True 4186 mRNA 0.52 13 26723797 27069232

Neighbor

gene id symbol gene type direction distance location
gcnt7 NA coding downstream 421402 26292415 ~ 26302395 (-)
eya2 eya2,LOC107666141,LOC106565282 coding downstream 517227 26152447 ~ 26206570 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding downstream 622276 26091651 ~ 26101521 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding downstream 704350 25711231 ~ 26019447 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding downstream 1142871 25578698 ~ 25580926 (-)
znfx1 NA coding upstream 224327 27293559 ~ 27317236 (-)
LOC111193752 NA coding upstream 248176 27317408 ~ 27319945 (-)
ddx27 ddx27,LOC107587605,LOC107681294,LOC107553908 coding upstream 254637 27323869 ~ 27344463 (-)
snrpb snrpb,LOC108272150 coding upstream 278235 27347467 ~ 27352451 (-)
LOC103032591 itcha,LOC108431834,LOC108271999,LOC107681287,LOC107666068 coding upstream 288956 27358188 ~ 27385149 (-)
G113942 NA non-coding downstream 34671 26688729 ~ 26689126 (-)
LOC111193690 NA non-coding downstream 87495 26633723 ~ 26636302 (-)
G113917 NA non-coding downstream 90570 26632977 ~ 26633227 (-)
G113912 NA non-coding downstream 94037 26629483 ~ 26629760 (-)
G113915 NA non-coding downstream 107593 26615936 ~ 26616204 (-)
G113949 NA non-coding upstream 56933 27126165 ~ 27126369 (-)
LOC111193691 NA non-coding upstream 91530 27160762 ~ 27189599 (-)
G113956 NA non-coding upstream 128671 27197903 ~ 27198191 (-)
G113964 NA non-coding upstream 203618 27272850 ~ 27273123 (-)
LOC111193753 NA non-coding upstream 396712 27465944 ~ 27467318 (-)
G113888 NA other downstream 330600 26346140 ~ 26393197 (-)
G113826 NA other downstream 661513 26032895 ~ 26062284 (-)
ctsa NA other downstream 1037220 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 2706996 24004549 ~ 24016801 (-)
G113304 NA other downstream 2822299 23901123 ~ 23901498 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 1056004 28125236 ~ 28129856 (-)
G114270 NA other upstream 1279033 28348265 ~ 28361481 (-)
G114304 NA other upstream 1514161 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 2078204 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 2209584 29278816 ~ 29284782 (-)

Expression


Co-expression Network